RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 GPX4P36969 197 aaPredicted RBP2.15□□□□□ -2.07
USP40-209ENST00000452724 CSNK1EP49674 416 aaKnown RBP2.15□□□□□ -2.07
USP40-209ENST00000452724 CDH17Q12864 832 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 OR7A5Q15622 319 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 SNRNP35Q16560 246 aaKnown RBP2.15□□□□□ -2.07
USP40-209ENST00000452724 ORMDL2Q53FV1 153 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 SLC8B1Q6J4K2 584 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 TMEM205Q6UW68 189 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 CERS6Q6ZMG9 384 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 TAS2R42Q7RTR8 314 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 OR56B2PQ8NGI1 322 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 OR2A1Q8NGT9 310 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 OR8U1Q8NH10 309 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 RNF157Q96PX1 679 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 CAMK2N2Q96S95 79 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 CENPKQ9BS16 269 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 RACGAP1Q9H0H5 632 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 UXTQ9UBK9 157 aaPredicted RBP2.15□□□□□ -2.07
USP40-209ENST00000452724 HPCAL4Q9UM19 191 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 PTPRTO14522 1441 aa2.15□□□□□ -2.07
USP40-209ENST00000452724 IGKV1D-17A0A075B6S4 117 aa2.14□□□□□ -2.07
USP40-209ENST00000452724 NUPL2O15504 423 aaKnown RBP2.14□□□□□ -2.07
USP40-209ENST00000452724 RRP8O43159 456 aaKnown RBP2.14□□□□□ -2.07
USP40-209ENST00000452724 KLHL41O60662 606 aa2.14□□□□□ -2.07
USP40-209ENST00000452724 YIF1AO95070 293 aa2.14□□□□□ -2.07
USP40-209ENST00000452724 IGKV1-17P01599 117 aa2.14□□□□□ -2.07
USP40-209ENST00000452724 APCSP02743 223 aa2.14□□□□□ -2.07
USP40-209ENST00000452724 ACSM4P0C7M7 580 aa2.14□□□□□ -2.07
USP40-209ENST00000452724 C1GALT1C1LP0DN25 315 aa2.14□□□□□ -2.07
USP40-209ENST00000452724 CALRP27797 417 aaKnown RBP2.14□□□□□ -2.07
USP40-209ENST00000452724 UBE2NP61088 152 aaKnown RBP2.14□□□□□ -2.07
USP40-209ENST00000452724 PRSS8Q16651 343 aa2.14□□□□□ -2.07
USP40-209ENST00000452724 CHRFAM7AQ494W8 412 aa2.14□□□□□ -2.07
USP40-209ENST00000452724 KRTAP13-2Q52LG2 175 aa2.14□□□□□ -2.07
USP40-209ENST00000452724 XKR7Q5GH72 579 aa2.14□□□□□ -2.07
USP40-209ENST00000452724 PPM1LQ5SGD2 360 aa2.14□□□□□ -2.07
USP40-209ENST00000452724 METTL13Q8N6R0 699 aa2.14□□□□□ -2.07
USP40-209ENST00000452724 ZFP41Q8N8Y5 198 aa2.14□□□□□ -2.07
USP40-209ENST00000452724 PRELID2Q8N945 189 aa2.14□□□□□ -2.07
USP40-209ENST00000452724 PIFOQ8TCI5 191 aa2.14□□□□□ -2.07
USP40-209ENST00000452724 RMI2Q96E14 147 aa2.14□□□□□ -2.07
USP40-209ENST00000452724 TIMM17AQ99595 171 aa2.14□□□□□ -2.07
USP40-209ENST00000452724 MICU1Q9BPX6 476 aa2.14□□□□□ -2.07
USP40-209ENST00000452724 MARCOQ9UEW3 520 aaPredicted RBP2.14□□□□□ -2.07
USP40-209ENST00000452724 LGALS13Q9UHV8 139 aa2.14□□□□□ -2.07
USP40-209ENST00000452724 TRMT112Q9UI30 125 aaKnown RBP2.14□□□□□ -2.07
USP40-209ENST00000452724 CAMTA1Q9Y6Y1 1673 aa2.14□□□□□ -2.07
USP40-209ENST00000452724 IGLV1-36A0A0B4J1U3 117 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 XKRY2A2RUG3 117 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 SMCO2A6NFE2 343 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 FAM47DPA6NHR8 397 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 BPY2O14599 106 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 CLOCKO15516 846 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 CIB2O75838 187 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 OR2J3O76001 311 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 DCNP07585 359 aaKnown RBP2.13□□□□□ -2.07
USP40-209ENST00000452724 CD3GP09693 182 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 OPRK1P41145 380 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 SLC11A1P49279 550 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 CDH6P55285 790 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 VSX2P58304 361 aaPredicted RBP2.13□□□□□ -2.07
USP40-209ENST00000452724 CACNG7P62955 275 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 RCAN2Q14206 197 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 QPRTQ15274 297 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 ZNF726P1Q15940 193 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 C9orf135Q5VTT2 229 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 SAXO2Q658L1 398 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 TMEM150AQ86TG1 271 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 OR7G2Q8NG99 324 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 OR4K5Q8NGD3 323 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 OR52P1PQ8NH57 321 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 FLYWCH2Q96CP2 140 aaKnown RBP2.13□□□□□ -2.07
USP40-209ENST00000452724 RASD2Q96D21 266 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 DNAJC1Q96KC8 554 aaKnown RBP2.13□□□□□ -2.07
USP40-209ENST00000452724 DOK1Q99704 481 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 RNF5Q99942 180 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 NUP58Q9BVL2 599 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 OSBPL11Q9BXB4 747 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 WFDC1Q9HC57 220 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 HRASLS2Q9NWW9 162 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 WIF1Q9Y5W5 379 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 TNS2Q63HR2 1409 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 AKNAQ7Z591 1439 aa2.13□□□□□ -2.07
USP40-209ENST00000452724 IGLV3-12A0A075B6K2 115 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 SMCO3A2RU48 225 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 OR6C74A6NCV1 312 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 ZNF716A6NP11 495 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 LYRM9A8MSI8 78 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 RPL36A-HNRNPH2H7BZ11 118 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 RNF13O43567 381 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 FKBP6O75344 327 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 HLA-DQA1P01909 254 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 ZNF735P0CB33 412 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 GGT1P19440 569 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 CELP19835 753 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 HCAR3P49019 387 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 HMGN5P82970 282 aaKnown RBP2.12□□□□□ -2.07
USP40-209ENST00000452724 PITPNAQ00169 270 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 ZNF816Q0VGE8 651 aaPredicted RBP2.12□□□□□ -2.07
USP40-209ENST00000452724 CDC20Q12834 499 aa2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms