RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 IFNA2P01563 188 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 LCKP06239 509 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 CELA3BP08861 270 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 FCGR1AP12314 374 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 DAOP14920 347 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 RAC2P15153 192 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 ZNF23P17027 643 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 TNFRSF1AP19438 455 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 KITLGP21583 273 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 PAICSP22234 425 aaKnown RBP5.49□□□□□ -1.53
USP54-202ENST00000413442 TNFSF4P23510 183 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 APEX1P27695 318 aaKnown RBP5.49□□□□□ -1.53
USP54-202ENST00000413442 FMO3P31513 532 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 MSX2P35548 267 aaPredicted RBP5.49□□□□□ -1.53
USP54-202ENST00000413442 CDKN2AP42771 156 aaKnown RBP5.49□□□□□ -1.53
USP54-202ENST00000413442 CRYBB2P43320 205 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 NR4A2P43354 598 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 SLC15A1P46059 708 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 CHN2P52757 468 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 SLC25A1P53007 311 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 FXYD6P3P58550 94 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 SPOCK1Q08629 439 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 SCGB2A2Q13296 93 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 TOP3AQ13472 1001 aaPredicted RBP5.49□□□□□ -1.53
USP54-202ENST00000413442 ENDOGQ14249 297 aaKnown RBP5.49□□□□□ -1.53
USP54-202ENST00000413442 FLOT2Q14254 428 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 SEC23BQ15437 767 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 SNCBQ16143 134 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 PCK2Q16822 640 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 NKPD1Q17RQ9 610 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 MESTQ5EB52 335 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 KRT80Q6KB66 452 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 VHLLQ6RSH7 139 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 CYP2R1Q6VVX0 501 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 ZNF620Q6ZNG0 422 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 SHFQ7M4L6 423 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 PEG10Q86TG7 708 aaKnown RBP5.49□□□□□ -1.53
USP54-202ENST00000413442 HIPK1Q86Z02 1210 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 KLBQ86Z14 1044 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 OR1F12Q8NHA8 337 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 FGFBP3Q8TAT2 258 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 FANK1Q8TC84 345 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 APOBEC3DQ96AK3 386 aaPredicted RBP5.49□□□□□ -1.53
USP54-202ENST00000413442 SLC7A6OSQ96CW6 309 aaPredicted RBP5.49□□□□□ -1.53
USP54-202ENST00000413442 HAVCR1Q96D42 359 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 MARS2Q96GW9 593 aaKnown RBP5.49□□□□□ -1.53
USP54-202ENST00000413442 C1orf159Q96HA4 380 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 CLPTM1LQ96KA5 538 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 SORCS2Q96PQ0 1159 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 PRRG3Q9BZD7 231 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 MRPL37Q9BZE1 423 aaKnown RBP5.49□□□□□ -1.53
USP54-202ENST00000413442 SLC22A4Q9H015 551 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 WNT5BQ9H1J7 359 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 SYT4Q9H2B2 425 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 TOR3AQ9H497 397 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 OPA3Q9H6K4 179 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 SRA1Q9HD15 236 aaKnown RBP5.49□□□□□ -1.53
USP54-202ENST00000413442 DECR2Q9NUI1 292 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 ARMC1Q9NVT9 282 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 PLEK2Q9NYT0 353 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 GMPR2Q9P2T1 348 aaKnown RBP5.49□□□□□ -1.53
USP54-202ENST00000413442 GDF2Q9UK05 429 aaPredicted RBP5.49□□□□□ -1.53
USP54-202ENST00000413442 POMPQ9Y244 141 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 COA3Q9Y2R0 106 aaPredicted RBP5.49□□□□□ -1.53
USP54-202ENST00000413442 ADAM18Q9Y3Q7 739 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 SAMHD1Q9Y3Z3 626 aaKnown RBP5.49□□□□□ -1.53
USP54-202ENST00000413442 CSMD2Q7Z408 3487 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 AKAP9Q99996 3911 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 F8P00451 2351 aa5.49□□□□□ -1.53
USP54-202ENST00000413442 MAP1AP78559 2803 aaPredicted RBP5.48□□□□□ -1.53
USP54-202ENST00000413442 LOC100509620A0A075B734 347 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 IGLV1-36A0A0B4J1U3 117 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 A0A1W2PPW3 197 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 TCRBV3S1A0A5B6 114 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 RIIAD1A6NNX1 92 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 A8MV72 311 aaPredicted RBP5.48□□□□□ -1.53
USP54-202ENST00000413442 BHLHE40O14503 412 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 SEC14L2O76054 403 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 UBOX5O94941 541 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 DIRAS1O95057 198 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 PPP1R3DO95685 299 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 ABHD16AO95870 558 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 TFP02787 698 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 CD55P08174 381 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 ADRA2AP08913 450 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 PATE4P0C8F1 98 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 HIST1H1CP16403 213 aaKnown RBP5.48□□□□□ -1.53
USP54-202ENST00000413442 CTLA4P16410 223 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 ZNF26P17031 533 aaPredicted RBP5.48□□□□□ -1.53
USP54-202ENST00000413442 PTNP21246 168 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 ATP6V1B2P21281 511 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 CCNOP22674 350 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 CFL1P23528 166 aaKnown RBP5.48□□□□□ -1.53
USP54-202ENST00000413442 CDAP32320 146 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 GRK5P34947 590 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 DDOSTP39656 456 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 TPTEP56180 551 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 PPP1CBP62140 327 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 ESRRGP62508 458 aa5.48□□□□□ -1.53
USP54-202ENST00000413442 FMODQ06828 376 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms