RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PDGFBP01127 241 aaPredicted RBP10.53□□□□□ -0.72
VPS39-201ENST00000318006 MGST1P10620 155 aaKnown RBP10.53□□□□□ -0.72
VPS39-201ENST00000318006 PAX6P26367 422 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 SDHAP31040 664 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 ADPRHP54922 357 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 MTCP1P56278 107 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 TLE1Q04724 770 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 SHHQ15465 462 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 OR52W1Q6IF63 320 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 GLDNQ6ZMI3 551 aaPredicted RBP10.53□□□□□ -0.72
VPS39-201ENST00000318006 FAM71CQ8NEG0 241 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 GNPNAT1Q96EK6 184 aaPredicted RBP10.53□□□□□ -0.72
VPS39-201ENST00000318006 CABLES2Q9BTV7 478 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 SEMA6CQ9H3T2 930 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 OSGIN2Q9Y236 505 aa10.53□□□□□ -0.72
VPS39-201ENST00000318006 PAPPA2Q9BXP8 1791 aa10.52□□□□□ -0.72
VPS39-201ENST00000318006 CBY3A6NI87 242 aa10.52□□□□□ -0.72
VPS39-201ENST00000318006 SULT2B1O00204 365 aa10.52□□□□□ -0.72
VPS39-201ENST00000318006 PNPP00491 289 aa10.52□□□□□ -0.72
VPS39-201ENST00000318006 FGF7P21781 194 aa10.52□□□□□ -0.72
VPS39-201ENST00000318006 MSX1P28360 303 aa10.52□□□□□ -0.72
VPS39-201ENST00000318006 RPL12P30050 165 aaKnown RBP10.52□□□□□ -0.72
VPS39-201ENST00000318006 SOX18P35713 384 aa10.52□□□□□ -0.72
VPS39-201ENST00000318006 SNRPNP63162 240 aaKnown RBP10.52□□□□□ -0.72
VPS39-201ENST00000318006 BAXQ07812 192 aa10.52□□□□□ -0.72
VPS39-201ENST00000318006 FAM209AQ5JX71 171 aa10.52□□□□□ -0.72
VPS39-201ENST00000318006 KIAA1958Q8N8K9 716 aa10.52□□□□□ -0.72
VPS39-201ENST00000318006 PPP1R1CQ8WVI7 109 aa10.52□□□□□ -0.72
VPS39-201ENST00000318006 FBXW5Q969U6 566 aa10.52□□□□□ -0.72
VPS39-201ENST00000318006 ELF4Q99607 663 aaPredicted RBP10.52□□□□□ -0.72
VPS39-201ENST00000318006 VN1R3Q9BXE9 311 aa10.52□□□□□ -0.72
VPS39-201ENST00000318006 CRLF2Q9HC73 371 aa10.52□□□□□ -0.72
VPS39-201ENST00000318006 CGGBP1Q9UFW8 167 aaPredicted RBP10.52□□□□□ -0.72
VPS39-201ENST00000318006 SERINC4A6NH21 518 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 SIGLEC6O43699 453 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 TMEM127O75204 238 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 ZFAND5O76080 213 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 TSPAN12O95859 305 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 DCTDP32321 178 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 CCR2P41597 374 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 EPHA4P54764 986 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 HAGHQ16775 308 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 OLIG3Q7RTU3 272 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 PTOV1Q86YD1 416 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 OR14A16Q8NHC5 309 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 HLA-CQ95604 372 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 FGGYQ96C11 551 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 PLEKHA2Q9HB19 425 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 CHRNA9Q9UGM1 479 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 SLC35E2P0CK97 266 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 G0S2P27469 103 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 PYCR3Q53H96 274 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 MFSD12Q6NUT3 480 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 BHLHA9Q7RTU4 235 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 BPIFCQ8NFQ6 507 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 OR6K3Q8NGY3 331 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 PPP1R35Q8TAP8 253 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 SMIM19Q96E16 107 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 SEH1LQ96EE3 360 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 MARVELD1Q9BSK0 173 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 RAB9BQ9NP90 201 aa10.52□□□□□ -0.73
VPS39-201ENST00000318006 ZC3H12DA2A288 527 aaKnown RBP10.51□□□□□ -0.73
VPS39-201ENST00000318006 CD3DP04234 171 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 ZP2Q05996 745 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 C19orf57Q0VDD7 668 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 CATR1Q13166 79 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 HLXQ14774 488 aaPredicted RBP10.51□□□□□ -0.73
VPS39-201ENST00000318006 MLF2Q15773 248 aaPredicted RBP10.51□□□□□ -0.73
VPS39-201ENST00000318006 ZNF750Q32MQ0 723 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 LINC00303Q3SY05 128 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 TCTN3Q6NUS6 607 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 MOB3CQ70IA8 216 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 SSX7Q7RTT5 188 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 NLGN4YQ8NFZ3 816 aaPredicted RBP10.51□□□□□ -0.73
VPS39-201ENST00000318006 OR5D18Q8NGL1 313 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 TRAF4Q9BUZ4 470 aaPredicted RBP10.51□□□□□ -0.73
VPS39-201ENST00000318006 PLK3Q9H4B4 646 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 RYDENQ9NUL5 291 aaKnown RBP10.51□□□□□ -0.73
VPS39-201ENST00000318006 TRBV11-1A0A0K0K1C0 115 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 LRRC37AA6NMS7 1700 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 ANKRD30BLA7E2S9 258 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 RNASEK-C17orf49H0YIS7 233 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 CLDN1O95832 211 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 CTGFP29279 349 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 FGF9P31371 208 aaPredicted RBP10.51□□□□□ -0.73
VPS39-201ENST00000318006 ECH1Q13011 328 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 COTL1Q14019 142 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 NKG7Q16617 165 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 C4orf17Q53FE4 359 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 MANEAQ5SRI9 462 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 TMEM81Q6P7N7 255 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 GLIPR1L1Q6UWM5 242 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 HSD17B13Q7Z5P4 300 aaPredicted RBP10.51□□□□□ -0.73
VPS39-201ENST00000318006 CPEB2Q7Z5Q1 589 aaKnown RBP10.51□□□□□ -0.73
VPS39-201ENST00000318006 ANGPTL5Q86XS5 388 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 SUMF1Q8NBK3 374 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 PSMF1Q92530 271 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 TTC9Q92623 222 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 LRFN5Q96NI6 719 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 DLL4Q9NR61 685 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms