RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 RPL35P42766 123 aaKnown RBP11.14□□□□□ -0.63
NUP88-201ENST00000225696 PSMD4P55036 377 aaKnown RBP11.14□□□□□ -0.63
NUP88-201ENST00000225696 CTAG1AP78358 180 aa11.14□□□□□ -0.63
NUP88-201ENST00000225696 FGL1Q08830 312 aa11.14□□□□□ -0.63
NUP88-201ENST00000225696 C1orf61Q13536 156 aa11.14□□□□□ -0.63
NUP88-201ENST00000225696 SNTB1Q13884 538 aaKnown RBP11.14□□□□□ -0.63
NUP88-201ENST00000225696 PAN3Q58A45 887 aaKnown RBP11.14□□□□□ -0.63
NUP88-201ENST00000225696 WDFY1Q8IWB7 410 aa11.14□□□□□ -0.63
NUP88-201ENST00000225696 ZNF679Q8IYX0 411 aa11.14□□□□□ -0.63
NUP88-201ENST00000225696 JAGN1Q8N5M9 183 aa11.14□□□□□ -0.63
NUP88-201ENST00000225696 ADAD2Q8NCV1 583 aaKnown RBP11.14□□□□□ -0.63
NUP88-201ENST00000225696 ZNF563Q8TA94 476 aa11.14□□□□□ -0.63
NUP88-201ENST00000225696 SLC25A44Q96H78 314 aaPredicted RBP11.14□□□□□ -0.63
NUP88-201ENST00000225696 ADOQ96SZ5 270 aa11.14□□□□□ -0.63
NUP88-201ENST00000225696 SLC25A21Q9BQT8 299 aaPredicted RBP11.14□□□□□ -0.63
NUP88-201ENST00000225696 SEMA6CQ9H3T2 930 aa11.14□□□□□ -0.63
NUP88-201ENST00000225696 ZNF768Q9H5H4 540 aaKnown RBP11.14□□□□□ -0.63
NUP88-201ENST00000225696 FN3KRPQ9HA64 309 aa11.14□□□□□ -0.63
NUP88-201ENST00000225696 SLC39A1Q9NY26 324 aa11.14□□□□□ -0.63
NUP88-201ENST00000225696 ZNF175Q9Y473 711 aa11.14□□□□□ -0.63
NUP88-201ENST00000225696 SOX1O00570 391 aaPredicted RBP11.13□□□□□ -0.63
NUP88-201ENST00000225696 LDLRAD4O15165 306 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 ZNF264O43296 627 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 UTS2O95399 124 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 CD74P04233 296 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 DCNP07585 359 aaKnown RBP11.13□□□□□ -0.63
NUP88-201ENST00000225696 POU2F2P09086 479 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 HOXB2P14652 356 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 IGFBP3P17936 291 aaPredicted RBP11.13□□□□□ -0.63
NUP88-201ENST00000225696 ZBTB25P24278 435 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 AGTR1P30556 359 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 CXADRP78310 365 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 IGLV3-21P80748 117 aaPredicted RBP11.13□□□□□ -0.63
NUP88-201ENST00000225696 ACKR1Q16570 336 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 FAM109BQ6ICB4 259 aaPredicted RBP11.13□□□□□ -0.63
NUP88-201ENST00000225696 FDX2Q6P4F2 183 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 Q6ZSR6 202 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 TMEM17Q86X19 198 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 KDM8Q8N371 416 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 CASTOR1Q8WTX7 329 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 SLC17A5Q9NRA2 495 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 UBQLN4Q9NRR5 601 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 MBD2Q9UBB5 411 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 UPB1Q9UBR1 384 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 FBXO9Q9UK97 447 aaPredicted RBP11.13□□□□□ -0.63
NUP88-201ENST00000225696 LRP12Q9Y561 859 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 TMEM14AQ9Y6G1 99 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 TMEM218A2RU14 115 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 OR2AT4A6NND4 320 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 DISC1C4P0D8 188 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 EEF1E1-BLOC1S5C9J1V9 151 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 F5H0A9 414 aaPredicted RBP11.13□□□□□ -0.63
NUP88-201ENST00000225696 OR2F2O95006 317 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 KLF8O95600 359 aaPredicted RBP11.13□□□□□ -0.63
NUP88-201ENST00000225696 BGLAPP02818 100 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 HOXC4P09017 264 aaPredicted RBP11.13□□□□□ -0.63
NUP88-201ENST00000225696 SLC25A4P12235 298 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 MAOBP27338 520 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 SKP1P63208 163 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 ZNF117Q03924 483 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 SRSF4Q08170 494 aaKnown RBP11.13□□□□□ -0.63
NUP88-201ENST00000225696 GPM6BQ13491 265 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 OR2F1Q13607 317 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 ZNF345Q14585 488 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 HFEQ30201 348 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 CDNFQ49AH0 187 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 EMC4Q5J8M3 183 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 TMEM71Q6P5X7 295 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 PAPD4Q6PIY7 484 aaKnown RBP11.13□□□□□ -0.63
NUP88-201ENST00000225696 ACOT7LQ6ZUV0 252 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 KCTD9Q7L273 389 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 RNF144BQ7Z419 303 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 BHLHE23Q8NDY6 225 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 OR13H1Q8NG92 308 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 NUDCD2Q8WVJ2 157 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 ROBO4Q8WZ75 1007 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 FAM46BQ96A09 425 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 TSNAXQ99598 290 aaKnown RBP11.13□□□□□ -0.63
NUP88-201ENST00000225696 ABHD6Q9BV23 337 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 IGFLR1Q9H665 355 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 ESRP2Q9H6T0 727 aaKnown RBP11.13□□□□□ -0.63
NUP88-201ENST00000225696 GAREM1Q9H706 876 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 OBP2AQ9NY56 170 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 GMEB2Q9UKD1 530 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 EMC9Q9Y3B6 208 aa11.13□□□□□ -0.63
NUP88-201ENST00000225696 KLF2Q9Y5W3 355 aaPredicted RBP11.13□□□□□ -0.63
NUP88-201ENST00000225696 IGLV1-36A0A0B4J1U3 117 aa11.12□□□□□ -0.63
NUP88-201ENST00000225696 PRSS37A4D1T9 235 aa11.12□□□□□ -0.63
NUP88-201ENST00000225696 FADS1O60427 444 aa11.12□□□□□ -0.63
NUP88-201ENST00000225696 ICOSLGO75144 302 aa11.12□□□□□ -0.63
NUP88-201ENST00000225696 ADAM8P78325 824 aa11.12□□□□□ -0.63
NUP88-201ENST00000225696 FLI1Q01543 452 aaPredicted RBP11.12□□□□□ -0.63
NUP88-201ENST00000225696 SSBP1Q04837 148 aaKnown RBP11.12□□□□□ -0.63
NUP88-201ENST00000225696 ELOCQ15369 112 aa11.12□□□□□ -0.63
NUP88-201ENST00000225696 INPP5JQ15735 1006 aaPredicted RBP11.12□□□□□ -0.63
NUP88-201ENST00000225696 PRTGQ2VWP7 1150 aa11.12□□□□□ -0.63
NUP88-201ENST00000225696 PLEKHN1Q494U1 663 aaPredicted RBP11.12□□□□□ -0.63
NUP88-201ENST00000225696 FJX1Q86VR8 437 aa11.12□□□□□ -0.63
NUP88-201ENST00000225696 CATSPERDQ86XM0 798 aa11.12□□□□□ -0.63
NUP88-201ENST00000225696 NUDT9Q9BW91 350 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms