RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 LRRC52Q8N7C0 313 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 CEP112Q8N8E3 955 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 C11orf72Q8NBR9 251 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 APCDD1LQ8NCL9 501 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 Q8NDZ9 215 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 FBXL13Q8NEE6 735 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 FAM83FQ8NEG4 500 aaPredicted RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 CCDC54Q8NEL0 328 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 STEAP2Q8NFT2 490 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 OR11H7Q8NGC8 314 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 OR52M1Q8NGK5 317 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 OR1S2Q8NGQ3 325 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 OR1L4Q8NGR5 311 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 COQ8AQ8NI60 647 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 PLPPR1Q8TBJ4 325 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 PIFOQ8TCI5 191 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 SCFD1Q8WVM8 642 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 CCDC47Q96A33 483 aaKnown RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 PTX4Q96A99 478 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 SLC25A46Q96AG3 418 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 TM4SF18Q96CE8 201 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 C10orf35Q96D05 121 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 CXorf40BQ96DE9 158 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 SLC41A3Q96GZ6 507 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 PLEKHA8Q96JA3 519 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 DNAJC1Q96KC8 554 aaKnown RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 TCEANC2Q96MN5 208 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 C18orf15Q96N68 181 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 ZFP3Q96NJ6 502 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 IP6K3Q96PC2 410 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 CAMK2N2Q96S95 79 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 ZNF607Q96SK3 696 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 ZNF382Q96SR6 550 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 CNN2Q99439 309 aaKnown RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 CCT7Q99832 543 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 SH3GL1Q99961 368 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 SH3GL3Q99963 347 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 THUMPD2Q9BTF0 503 aaKnown RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 ZSCAN5AQ9BUG6 496 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 GGTLC1Q9BX51 225 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 TMEM59Q9BXS4 323 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 FGF23Q9GZV9 251 aaPredicted RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 RSPH9Q9H1X1 276 aaPredicted RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 ZSCAN16Q9H4T2 348 aaPredicted RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 ZNF442Q9H7R0 627 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 RMND5AQ9H871 391 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 PLEKHF2Q9H8W4 249 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 LINC00574Q9H8X3 128 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 LIN28AQ9H9Z2 209 aaKnown RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 SLC38A10Q9HBR0 1119 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 MCCC2Q9HCC0 563 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 MRPL47Q9HD33 250 aaKnown RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 FBXO6Q9NRD1 293 aaPredicted RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 SAMSN1Q9NSI8 373 aaKnown RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 SLC35D1Q9NTN3 355 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 UVRAGQ9P2Y5 699 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 EPS15L1Q9UBC2 864 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 SHPKQ9UHJ6 478 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 CTNNA3Q9UI47 895 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 ZNF639Q9UID6 485 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 KIAA1257Q9ULG3 409 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 ODF2LQ9ULJ1 636 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 VANGL2Q9ULK5 521 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 AURKCQ9UQB9 309 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 CHMP2BQ9UQN3 213 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 ST3GAL6Q9Y274 331 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 PIGLQ9Y2B2 252 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 CHTOPQ9Y3Y2 248 aaKnown RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 UBIAD1Q9Y5Z9 338 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 KCNE3Q9Y6H6 103 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 R4GN34 69 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 LRP1Q07954 4544 aaKnown RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 SVILO95425 2214 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 ANK2Q01484 3957 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 PLXNB1O43157 2135 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 ATP10AO60312 1499 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 ADGRL1O94910 1474 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 RPRD2Q5VT52 1461 aaKnown RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 SDK1Q7Z5N4 2213 aa0.09□□□□□ -2.39
VPS35-212ENST00000640313 SYNE1Q8NF91 8797 aaKnown RBP0.09□□□□□ -2.4
VPS35-212ENST00000640313 IGLV10-54A0A075B6I4 117 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 IGKV1-27A0A075B6S5 117 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 TRAV6A0A075B6T7 132 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 ARPC4-TTLL3A0A0A6YYG9 625 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 IGHV1-3A0A0C4DH29 117 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 IGKV2-24A0A0C4DH68 120 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 ZNF816-ZNF321PA0A0X1KG74 233 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 CLRN2A0PK11 232 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 C4orf51C9J302 202 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 KRBOX1C9JBD0 128 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 ZNF878C9JN71 531 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 C3orf84H3BNL1 204 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 J3QKU1 62 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 L7N2F9 121 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 UBXN8O00124 270 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 HAS3O00219 553 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 TIMM8AO60220 97 aaPredicted RBP0.09□□□□□ -2.4
VPS35-212ENST00000640313 SOX15O60248 233 aa0.09□□□□□ -2.4
VPS35-212ENST00000640313 EEDO75530 441 aaKnown RBP0.09□□□□□ -2.4
VPS35-212ENST00000640313 IDH1O75874 414 aaKnown RBP0.09□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms