RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 ZFPL1O95159 310 aa14.92□□□□□ -0.02
CLN3-252ENST00000636907 RORCP51449 518 aa14.92□□□□□ -0.02
CLN3-252ENST00000636907 KCNMB1Q16558 191 aa14.92□□□□□ -0.02
CLN3-252ENST00000636907 FAM27D1Q5T7N8 215 aa14.92□□□□□ -0.02
CLN3-252ENST00000636907 OR7E24Q6IFN5 339 aa14.92□□□□□ -0.02
CLN3-252ENST00000636907 LINC00299Q6ZSB3 139 aa14.92□□□□□ -0.02
CLN3-252ENST00000636907 AAED1Q7RTV5 226 aa14.92□□□□□ -0.02
CLN3-252ENST00000636907 PRSS35Q8N3Z0 413 aa14.92□□□□□ -0.02
CLN3-252ENST00000636907 OR2G2Q8NGZ5 317 aa14.92□□□□□ -0.02
CLN3-252ENST00000636907 RNF128Q8TEB7 428 aa14.92□□□□□ -0.02
CLN3-252ENST00000636907 WDYHV1Q96HA8 205 aa14.92□□□□□ -0.02
CLN3-252ENST00000636907 ULBP2Q9BZM5 246 aa14.92□□□□□ -0.02
CLN3-252ENST00000636907 C6orf62Q9GZU0 229 aaPredicted RBP14.92□□□□□ -0.02
CLN3-252ENST00000636907 MCTS1Q9ULC4 181 aaKnown RBP14.92□□□□□ -0.02
CLN3-252ENST00000636907 ZNF281Q9Y2X9 895 aa14.92□□□□□ -0.02
CLN3-252ENST00000636907 LRP12Q9Y561 859 aa14.92□□□□□ -0.02
CLN3-252ENST00000636907 PCDHGA9Q9Y5G4 932 aaKnown RBP14.92□□□□□ -0.02
CLN3-252ENST00000636907 LHFPL6Q9Y693 200 aa14.92□□□□□ -0.02
CLN3-252ENST00000636907 ZNF407Q9C0G0 2248 aa14.92□□□□□ -0.02
CLN3-252ENST00000636907 IGKV3D-15A0A087WSY6 115 aa14.91□□□□□ -0.02
CLN3-252ENST00000636907 CASKO14936 926 aa14.91□□□□□ -0.02
CLN3-252ENST00000636907 DHHO43323 396 aa14.91□□□□□ -0.02
CLN3-252ENST00000636907 SERPINA3P01011 423 aa14.91□□□□□ -0.02
CLN3-252ENST00000636907 PDGFAP04085 211 aa14.91□□□□□ -0.02
CLN3-252ENST00000636907 BMXP51813 675 aa14.91□□□□□ -0.02
CLN3-252ENST00000636907 RIDAP52758 137 aaKnown RBP14.91□□□□□ -0.02
CLN3-252ENST00000636907 HNRNPA0Q13151 305 aaKnown RBP14.91□□□□□ -0.02
CLN3-252ENST00000636907 ZNF169Q14929 603 aaPredicted RBP14.91□□□□□ -0.02
CLN3-252ENST00000636907 FOXL2NBQ6ZUU3 175 aa14.91□□□□□ -0.02
CLN3-252ENST00000636907 FNDC9Q8TBE3 224 aa14.91□□□□□ -0.02
CLN3-252ENST00000636907 RNF133Q8WVZ7 376 aa14.91□□□□□ -0.02
CLN3-252ENST00000636907 RGP1Q92546 391 aaPredicted RBP14.91□□□□□ -0.02
CLN3-252ENST00000636907 TMEM45BQ96B21 275 aa14.91□□□□□ -0.02
CLN3-252ENST00000636907 DCBLD2Q96PD2 775 aa14.91□□□□□ -0.02
CLN3-252ENST00000636907 RBM24Q9BX46 236 aaKnown RBP14.91□□□□□ -0.02
CLN3-252ENST00000636907 OR4C45A6NMZ5 311 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 IGHG3P01860 377 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 CPN1P15169 458 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 CALRP27797 417 aaKnown RBP14.9□□□□□ -0.02
CLN3-252ENST00000636907 EIF2S3P41091 472 aaKnown RBP14.9□□□□□ -0.02
CLN3-252ENST00000636907 KIR3DL2P43630 455 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 CAV3P56539 151 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 ZMAT1Q5H9K5 638 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 FDX2Q6P4F2 183 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 C4orf45Q96LM5 186 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 KCNS3Q9BQ31 491 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 GDF2Q9UK05 429 aaPredicted RBP14.9□□□□□ -0.02
CLN3-252ENST00000636907 CAMK2AQ9UQM7 478 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 POLR1DQ9Y2S0 133 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 CFAP47Q6ZTR5 3102 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 PNPP00491 289 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 MTNR1BP49286 362 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 MFGE8Q08431 387 aaPredicted RBP14.9□□□□□ -0.02
CLN3-252ENST00000636907 SGCAQ16586 387 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 YIF1BQ5BJH7 314 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 WDR38Q5JTN6 314 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 CFAP77Q6ZQR2 320 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.9□□□□□ -0.02
CLN3-252ENST00000636907 OR10S1Q8NGN2 331 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 OR5AK2Q8NH90 309 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 NABP1Q96AH0 204 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 SLAMF6Q96DU3 332 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 ZNF837Q96EG3 531 aaPredicted RBP14.9□□□□□ -0.02
CLN3-252ENST00000636907 OR14A2Q96R54 314 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 PRRG4Q9BZD6 226 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 NELFAQ9H3P2 528 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 C1orf198Q9H425 327 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 AKIP1Q9NQ31 210 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 CENPMQ9NSP4 180 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 ASH2LQ9UBL3 628 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 FBXL3Q9UKT7 428 aa14.9□□□□□ -0.02
CLN3-252ENST00000636907 A0A075B6Q4 140 aa14.89□□□□□ -0.03
CLN3-252ENST00000636907 A0A1W2PPK0 400 aa14.89□□□□□ -0.03
CLN3-252ENST00000636907 K7EM74 188 aa14.89□□□□□ -0.03
CLN3-252ENST00000636907 ZNF254O75437 659 aa14.89□□□□□ -0.03
CLN3-252ENST00000636907 SRSF10O75494 262 aaKnown RBP14.89□□□□□ -0.03
CLN3-252ENST00000636907 WISP2O76076 250 aa14.89□□□□□ -0.03
CLN3-252ENST00000636907 MSR1P21757 451 aa14.89□□□□□ -0.03
CLN3-252ENST00000636907 ZNF84P51523 738 aa14.89□□□□□ -0.03
CLN3-252ENST00000636907 DEGS2Q6QHC5 323 aa14.89□□□□□ -0.03
CLN3-252ENST00000636907 PAMR1Q6UXH9 720 aa14.89□□□□□ -0.03
CLN3-252ENST00000636907 UNQ9370/PRO34162Q6UXP9 181 aa14.89□□□□□ -0.03
CLN3-252ENST00000636907 CHMP1BQ7LBR1 199 aa14.89□□□□□ -0.03
CLN3-252ENST00000636907 TEX19Q8NA77 164 aa14.89□□□□□ -0.03
CLN3-252ENST00000636907 OR2AJ1Q8NGZ0 328 aa14.89□□□□□ -0.03
CLN3-252ENST00000636907 ZNF416Q9BWM5 594 aa14.89□□□□□ -0.03
CLN3-252ENST00000636907 PLEKHB1Q9UF11 243 aaPredicted RBP14.89□□□□□ -0.03
CLN3-252ENST00000636907 NOSIPQ9Y314 301 aaKnown RBP14.89□□□□□ -0.03
CLN3-252ENST00000636907 DNAJC13O75165 2243 aa14.88□□□□□ -0.03
CLN3-252ENST00000636907 GPR171O14626 319 aa14.88□□□□□ -0.03
CLN3-252ENST00000636907 GATBO75879 557 aaKnown RBP14.88□□□□□ -0.03
CLN3-252ENST00000636907 NCR1O76036 304 aa14.88□□□□□ -0.03
CLN3-252ENST00000636907 H2BFMP0C1H6 154 aa14.88□□□□□ -0.03
CLN3-252ENST00000636907 BMP4P12644 408 aa14.88□□□□□ -0.03
CLN3-252ENST00000636907 GUCA1AP43080 201 aaPredicted RBP14.88□□□□□ -0.03
CLN3-252ENST00000636907 MAGEB1P43366 347 aa14.88□□□□□ -0.03
CLN3-252ENST00000636907 LSM6P62312 80 aaKnown RBP14.88□□□□□ -0.03
CLN3-252ENST00000636907 DYNC1I2Q13409 638 aaKnown RBP14.88□□□□□ -0.03
CLN3-252ENST00000636907 Q6ZS92 163 aa14.88□□□□□ -0.03
CLN3-252ENST00000636907 LINGO2Q7L985 606 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms