RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 BPIFA2Q96DR5 249 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 MARS2Q96GW9 593 aaKnown RBP15.68■□□□□ 0.1
CLN3-241ENST00000635861 JMJD8Q96S16 334 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 EGLN1Q9GZT9 426 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 ZDHHC8Q9ULC8 765 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 WIPI2Q9Y4P8 454 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 C5orf49A4QMS7 147 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 A6NIZ1 184 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 VGLL3A8MV65 326 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 SLC22A2O15244 555 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 DEAF1O75398 565 aaPredicted RBP15.67■□□□□ 0.1
CLN3-241ENST00000635861 IGHV2-5P01817 119 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 TUBG1P23258 451 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 SLC9A3P48764 834 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 RAP1BP61224 184 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 RAP1AP62834 184 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 PSG4Q00888 419 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 MVKQ03426 396 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 FMODQ06828 376 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 KLF10Q13118 480 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 LAPTM4AQ15012 233 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 SGCAQ16586 387 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 LRRC23Q53EV4 343 aaPredicted RBP15.67■□□□□ 0.1
CLN3-241ENST00000635861 FAHD2BQ6P2I3 314 aaPredicted RBP15.67■□□□□ 0.1
CLN3-241ENST00000635861 ARL9Q6T311 187 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 C12orf54Q6X4T0 127 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 ZNF101Q8IZC7 436 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.67■□□□□ 0.1
CLN3-241ENST00000635861 OR2T12Q8NG77 320 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 FAHD2AQ96GK7 314 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 OR2H1Q9GZK4 316 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 ELOVL3Q9HB03 270 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 TUBG2Q9NRH3 451 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 A4GNTQ9UNA3 340 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 TIMM10BQ9Y5J6 103 aa15.67■□□□□ 0.1
CLN3-241ENST00000635861 LOC100509620A0A075B734 347 aa15.66■□□□□ 0.1
CLN3-241ENST00000635861 VENTXO95231 258 aa15.66■□□□□ 0.1
CLN3-241ENST00000635861 MPZL1O95297 269 aa15.66■□□□□ 0.1
CLN3-241ENST00000635861 IFI30P13284 250 aa15.66■□□□□ 0.1
CLN3-241ENST00000635861 WNT5AP41221 380 aa15.66■□□□□ 0.1
CLN3-241ENST00000635861 ARHGDIAP52565 204 aa15.66■□□□□ 0.1
CLN3-241ENST00000635861 ARPINQ7Z6K5 226 aa15.66■□□□□ 0.1
CLN3-241ENST00000635861 ZER1Q7Z7L7 766 aa15.66■□□□□ 0.1
CLN3-241ENST00000635861 RNF113BQ8IZP6 322 aaKnown RBP15.66■□□□□ 0.1
CLN3-241ENST00000635861 OFCC1Q8IZS5 231 aa15.66■□□□□ 0.1
CLN3-241ENST00000635861 FAM156AQ8NDB6 213 aa15.66■□□□□ 0.1
CLN3-241ENST00000635861 SLC25A40Q8TBP6 338 aa15.66■□□□□ 0.1
CLN3-241ENST00000635861 KLF14Q8TD94 323 aaPredicted RBP15.66■□□□□ 0.1
CLN3-241ENST00000635861 IPCEF1Q8WWN9 437 aaPredicted RBP15.66■□□□□ 0.1
CLN3-241ENST00000635861 NSMAFQ92636 917 aa15.66■□□□□ 0.1
CLN3-241ENST00000635861 NDRG4Q9ULP0 352 aaKnown RBP15.66■□□□□ 0.1
CLN3-241ENST00000635861 PCDHB10Q9UN67 800 aa15.66■□□□□ 0.1
CLN3-241ENST00000635861 ARHGAP32A7KAX9 2087 aa15.66■□□□□ 0.1
CLN3-241ENST00000635861 DOCK11Q5JSL3 2073 aa15.65■□□□□ 0.1
CLN3-241ENST00000635861 IGKV1D-43A0A0B4J1Z2 117 aa15.65■□□□□ 0.1
CLN3-241ENST00000635861 ELOVL7A1L3X0 281 aa15.65■□□□□ 0.1
CLN3-241ENST00000635861 PLPP2O43688 288 aa15.65■□□□□ 0.1
CLN3-241ENST00000635861 IGHV1-46P01743 117 aa15.65■□□□□ 0.1
CLN3-241ENST00000635861 CD55P08174 381 aa15.65■□□□□ 0.1
CLN3-241ENST00000635861 COX5BP10606 129 aa15.65■□□□□ 0.1
CLN3-241ENST00000635861 COMPP49747 757 aaPredicted RBP15.65■□□□□ 0.1
CLN3-241ENST00000635861 HILS1P60008 231 aa15.65■□□□□ 0.1
CLN3-241ENST00000635861 ERVK-25P63136 954 aa15.65■□□□□ 0.1
CLN3-241ENST00000635861 TSTQ16762 297 aaKnown RBP15.65■□□□□ 0.1
CLN3-241ENST00000635861 AVPI1Q5T686 147 aa15.65■□□□□ 0.1
CLN3-241ENST00000635861 C1QL2Q7Z5L3 287 aa15.65■□□□□ 0.1
CLN3-241ENST00000635861 PEG10Q86TG7 708 aaKnown RBP15.65■□□□□ 0.1
CLN3-241ENST00000635861 MICU2Q8IYU8 434 aa15.65■□□□□ 0.1
CLN3-241ENST00000635861 FITM2Q8N6M3 262 aa15.65■□□□□ 0.1
CLN3-241ENST00000635861 LRRC75AQ8NAA5 344 aa15.65■□□□□ 0.1
CLN3-241ENST00000635861 AKR7LQ8NHP1 331 aa15.65■□□□□ 0.1
CLN3-241ENST00000635861 TPD52L3Q96J77 140 aa15.65■□□□□ 0.1
CLN3-241ENST00000635861 ARMCX1Q9P291 453 aa15.65■□□□□ 0.1
CLN3-241ENST00000635861 C12orf71A8MTZ7 269 aa15.64■□□□□ 0.09
CLN3-241ENST00000635861 TRIM77I1YAP6 450 aa15.64■□□□□ 0.09
CLN3-241ENST00000635861 AHCYL1O43865 530 aa15.64■□□□□ 0.09
CLN3-241ENST00000635861 PIP5K1CO60331 668 aa15.64■□□□□ 0.09
CLN3-241ENST00000635861 EPHA1P21709 976 aa15.64■□□□□ 0.09
CLN3-241ENST00000635861 MSR1P21757 451 aa15.64■□□□□ 0.09
CLN3-241ENST00000635861 LAP3P28838 519 aa15.64■□□□□ 0.09
CLN3-241ENST00000635861 LIMS1P48059 325 aa15.64■□□□□ 0.09
CLN3-241ENST00000635861 CTXN1P60606 82 aa15.64■□□□□ 0.09
CLN3-241ENST00000635861 PPP1CBP62140 327 aa15.64■□□□□ 0.09
CLN3-241ENST00000635861 GLO1Q04760 184 aa15.64■□□□□ 0.09
CLN3-241ENST00000635861 PRKCDQ05655 676 aa15.64■□□□□ 0.09
CLN3-241ENST00000635861 TOP3AQ13472 1001 aaPredicted RBP15.64■□□□□ 0.09
CLN3-241ENST00000635861 TRAM2Q15035 370 aa15.64■□□□□ 0.09
CLN3-241ENST00000635861 FAM216AQ8WUB2 273 aa15.64■□□□□ 0.09
CLN3-241ENST00000635861 RBM4Q9BWF3 364 aaKnown RBP15.64■□□□□ 0.09
CLN3-241ENST00000635861 OR2J1Q9GZK6 312 aa15.64■□□□□ 0.09
CLN3-241ENST00000635861 WNT5BQ9H1J7 359 aa15.64■□□□□ 0.09
CLN3-241ENST00000635861 KLHL21Q9UJP4 597 aa15.64■□□□□ 0.09
CLN3-241ENST00000635861 PPIAL4EA0A075B759 164 aa15.63■□□□□ 0.09
CLN3-241ENST00000635861 PPIAL4CA0A0B4J2A2 164 aa15.63■□□□□ 0.09
CLN3-241ENST00000635861 PPIAL4DF5H284 164 aa15.63■□□□□ 0.09
CLN3-241ENST00000635861 UBOX5O94941 541 aa15.63■□□□□ 0.09
CLN3-241ENST00000635861 IFNW1P05000 195 aa15.63■□□□□ 0.09
CLN3-241ENST00000635861 PPIAL4FP0DN26 164 aa15.63■□□□□ 0.09
CLN3-241ENST00000635861 MPV17P39210 176 aa15.63■□□□□ 0.09
CLN3-241ENST00000635861 DCAF12L2Q5VW00 463 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms