RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 ABHD6Q9BV23 337 aa12.97□□□□□ -0.33
SHKBP1-211ENST00000595945 RBM38Q9H0Z9 239 aaKnown RBP12.97□□□□□ -0.33
SHKBP1-211ENST00000595945 NELFAQ9H3P2 528 aa12.97□□□□□ -0.33
SHKBP1-211ENST00000595945 SEC61A2Q9H9S3 476 aa12.97□□□□□ -0.33
SHKBP1-211ENST00000595945 SIAEQ9HAT2 523 aa12.97□□□□□ -0.33
SHKBP1-211ENST00000595945 PRSS50Q9UI38 385 aa12.97□□□□□ -0.33
SHKBP1-211ENST00000595945 MRM2Q9UI43 246 aaKnown RBP12.97□□□□□ -0.33
SHKBP1-211ENST00000595945 LHFPL6Q9Y693 200 aa12.97□□□□□ -0.33
SHKBP1-211ENST00000595945 PRR14LQ5THK1 2151 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 SMIM31A0A1B0GVY4 71 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 ZNF587BE7ETH6 402 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 SULT1C4O75897 302 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 IGHV3-9P01782 118 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 MT-ND5P03915 603 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 GLI4P10075 376 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 NPR2P20594 1047 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 LIPAP38571 399 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 FOXG1P55316 489 aaPredicted RBP12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 OR12D2P58182 307 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 HIST1H3AP68431 136 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 SIRPAP78324 504 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 BDH1Q02338 343 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 ROM1Q03395 351 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 RBPJQ06330 500 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 MLLT11Q13015 90 aaPredicted RBP12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 TPBGQ13641 420 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 EIF2B1Q14232 305 aaKnown RBP12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 MED22Q15528 200 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 NRN1LQ496H8 165 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 TP53I3Q53FA7 332 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 ARMCX4Q5H9R4 360 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 HIST2H3PS2Q5TEC6 136 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 FAM27BQ5VT28 67 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 FBXW9Q5XUX1 488 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 PLEKHG7Q6ZR37 379 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 HIST2H3AQ71DI3 136 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 VASH1Q7L8A9 365 aaPredicted RBP12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 LINC00346Q8IVM7 164 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 ST6GALNAC3Q8NDV1 305 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 GATAD2BQ8WXI9 593 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 HTRA1Q92743 480 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 RNF166Q96A37 237 aaPredicted RBP12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 C4orf36Q96KX1 117 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 OR8B4Q96RC9 309 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 MYCBPQ99417 103 aaPredicted RBP12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 FOXB1Q99853 325 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 TTYH2Q9BSA4 534 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 ZNF416Q9BWM5 594 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 C12orf49Q9H741 205 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 BABAM2Q9NXR7 383 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 LAMP5Q9UJQ1 280 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 CEPT1Q9Y6K0 416 aa12.96□□□□□ -0.33
SHKBP1-211ENST00000595945 METTL15A6NJ78 407 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 MAGEB4O15481 346 aaPredicted RBP12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 TMCC2O75069 709 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 KRT33AO76009 404 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 CNOT4O95628 575 aaKnown RBP12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 WNT11O96014 354 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 CGAP01215 116 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 CST2P09228 141 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 TMIGD3P0DMS9 266 aaPredicted RBP12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 ARF1P84077 181 aaKnown RBP12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 EGR3Q06889 387 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 SSX1Q16384 188 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 SGCAQ16586 387 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 ST3GAL2Q16842 350 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 FOXB2Q5VYV0 432 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 VWA1Q6PCB0 445 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 DCXRQ7Z4W1 244 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 KCTD20Q7Z5Y7 419 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 NAXEQ8NCW5 288 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 OR10S1Q8NGN2 331 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 OR52N5Q8NH56 324 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 THEM6Q8WUY1 208 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 SNX33Q8WV41 574 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 RNF133Q8WVZ7 376 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 STARD4Q96DR4 205 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 PELI1Q96FA3 418 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 MAP6Q96JE9 813 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 TTTY10Q9BZA0 68 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 PLSCR4Q9NRQ2 329 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 SLCO1C1Q9NYB5 712 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 NDUFA13Q9P0J0 144 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 UPB1Q9UBR1 384 aa12.95□□□□□ -0.34
SHKBP1-211ENST00000595945 DIDO1Q9BTC0 2240 aaKnown RBP12.94□□□□□ -0.34
SHKBP1-211ENST00000595945 SPENQ96T58 3664 aaKnown RBP12.94□□□□□ -0.34
SHKBP1-211ENST00000595945 HSPB2A8KAH6 182 aa12.94□□□□□ -0.34
SHKBP1-211ENST00000595945 E9PI62 339 aa12.94□□□□□ -0.34
SHKBP1-211ENST00000595945 H3BSA7 217 aa12.94□□□□□ -0.34
SHKBP1-211ENST00000595945 J3QLW9 94 aa12.94□□□□□ -0.34
SHKBP1-211ENST00000595945 IL2RAP01589 272 aa12.94□□□□□ -0.34
SHKBP1-211ENST00000595945 OR8G3PP0DMU2 310 aa12.94□□□□□ -0.34
SHKBP1-211ENST00000595945 CPEP16870 476 aa12.94□□□□□ -0.34
SHKBP1-211ENST00000595945 ZNF19P17023 458 aa12.94□□□□□ -0.34
SHKBP1-211ENST00000595945 MPGP29372 298 aa12.94□□□□□ -0.34
SHKBP1-211ENST00000595945 GUCA1AP43080 201 aaPredicted RBP12.94□□□□□ -0.34
SHKBP1-211ENST00000595945 SH3BGRP55822 239 aaPredicted RBP12.94□□□□□ -0.34
SHKBP1-211ENST00000595945 HSPB2Q16082 182 aa12.94□□□□□ -0.34
SHKBP1-211ENST00000595945 TSTQ16762 297 aaKnown RBP12.94□□□□□ -0.34
SHKBP1-211ENST00000595945 CORO6Q6QEF8 472 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms