RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 SEMA5BQ9P283 1151 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 UPB1Q9UBR1 384 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 MUTYHQ9UIF7 546 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 UBQLN1Q9UMX0 589 aaKnown RBP2.92□□□□□ -1.94
VPS35-208ENST00000568612 A4GNTQ9UNA3 340 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 SAMD4AQ9UPU9 718 aaKnown RBP2.92□□□□□ -1.94
VPS35-208ENST00000568612 ANGPT4Q9Y264 503 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 UBE2J1Q9Y385 318 aaPredicted RBP2.92□□□□□ -1.94
VPS35-208ENST00000568612 TMED3Q9Y3Q3 217 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 PCYT1BQ9Y5K3 369 aaPredicted RBP2.92□□□□□ -1.94
VPS35-208ENST00000568612 TEX264Q9Y6I9 313 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 CDH10Q9Y6N8 788 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 PTPRJQ12913 1337 aa2.92□□□□□ -1.94
VPS35-208ENST00000568612 BTAF1O14981 1849 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 PLIN4Q96Q06 1357 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 SCN9AQ15858 1988 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 TRAV26-1A0A087WT03 109 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 KCNE1BA0A087WTH5 132 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 TRAV19A0A0A6YYK7 116 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 IGHV2-70DA0A0C4DH43 119 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 SMCO3A2RU48 225 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 PRORSD1PA6NEY8 169 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 OR5H14A6NHG9 310 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 HSPB2A8KAH6 182 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 HMSDA8MTL9 139 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 ZNF724A8MTY0 619 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 A8MVM7 634 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 PPP1R2P9O14990 202 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 ARPC3O15145 178 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 LDB2O43679 373 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 SSNA1O43805 119 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 SLC37A4O43826 429 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 WDR1O75083 606 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 SH3BGRLO75368 114 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 ADAP1O75689 374 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 ANXA9O76027 345 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 DFFBO76075 338 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 YIF1AO95070 293 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 GLP2RO95838 553 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 TSPAN13O95857 204 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 SCGB1D1O95968 90 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 IGSF6O95976 241 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 HPRT1P00492 218 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 CST4P01036 141 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 AMBPP02760 352 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 ARG1P05089 322 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 ANXA4P09525 319 aaPredicted RBP2.91□□□□□ -1.94
VPS35-208ENST00000568612 FGF3P11487 239 aaPredicted RBP2.91□□□□□ -1.94
VPS35-208ENST00000568612 HSD17B1P14061 328 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 CPN1P15169 458 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 ST6GAL1P15907 406 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 IL1RNP18510 177 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 CXCL2P19875 107 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 ACKR3P25106 362 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 CHRNB4P30926 498 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 ID1P41134 155 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 GPR12P47775 334 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 LGALS7P47929 136 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 MARCKSL1P49006 195 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 NPY4RP50391 375 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 RAB7AP51149 207 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 GALCP54803 685 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 RAB8AP61006 207 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 ISL1P61371 349 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 RPS13P62277 151 aaKnown RBP2.91□□□□□ -1.94
VPS35-208ENST00000568612 HERV-K104P63124 156 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 HBA1P69905 142 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 PITPNAQ00169 270 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 RAB31Q13636 194 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 TNFAIP1Q13829 316 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 KIAA0141Q14154 515 aaPredicted RBP2.91□□□□□ -1.94
VPS35-208ENST00000568612 DPYSL3Q14195 570 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 HERPUD1Q15011 391 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 HSPB2Q16082 182 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 UGCGQ16739 394 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 SLC35G1Q2M3R5 365 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 C18orf21Q32NC0 220 aaPredicted RBP2.91□□□□□ -1.94
VPS35-208ENST00000568612 ZNF260Q3ZCT1 412 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 CRY2Q49AN0 593 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 COX19Q49B96 90 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 UNC50Q53HI1 259 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 KHDC3LQ587J8 217 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 CARD16Q5EG05 197 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 TMEM255AQ5JRV8 349 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 PLEKHS1Q5SXH7 462 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 GCNT6Q5T4J0 391 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 IDNKQ5T6J7 187 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 BCL2L15Q5TBC7 163 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 PLCXD3Q63HM9 321 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 ZNF660Q6AZW8 331 aaPredicted RBP2.91□□□□□ -1.94
VPS35-208ENST00000568612 FAM71E1Q6IPT2 247 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 CCDC144NLQ6NUI1 221 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 PRSS55Q6UWB4 352 aaPredicted RBP2.91□□□□□ -1.94
VPS35-208ENST00000568612 DRAM2Q6UX65 266 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 FAM131AQ6UXB0 335 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 ZNF562Q6V9R5 426 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 FBXW12Q6X9E4 464 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 MTSS1LQ765P7 747 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 ZNF367Q7RTV3 350 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 LRRTM1Q86UE6 522 aa2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms