RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 NPDC1Q9NQX5 325 aaPredicted RBP5.6□□□□□ -1.51
CLN3-223ENST00000566472 DLL4Q9NR61 685 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 B3GNT2Q9NY97 397 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 KLRF1Q9NZS2 232 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 MYOTQ9UBF9 498 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 OR52A1Q9UKL2 312 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 ELF5Q9UKW6 265 aaPredicted RBP5.6□□□□□ -1.51
CLN3-223ENST00000566472 ATXN7L1Q9ULK2 861 aaPredicted RBP5.6□□□□□ -1.51
CLN3-223ENST00000566472 MGAT4AQ9UM21 535 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 HDGFL3Q9Y3E1 203 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 SIT1Q9Y3P8 196 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 CHD9Q3L8U1 2897 aa5.6□□□□□ -1.51
CLN3-223ENST00000566472 A0A087WV48 116 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 TMEM272A0A1B0GTI8 110 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 A0A1W2PQ72 361 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 UBE2QL1A1L167 161 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 CPED1A4D0V7 1026 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 CCDC85CA6NKD9 419 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.59□□□□□ -1.51
CLN3-223ENST00000566472 ARPC1BO15143 372 aaKnown RBP5.59□□□□□ -1.51
CLN3-223ENST00000566472 LDLRAD4O15165 306 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 SIGLEC6O43699 453 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 DOK2O60496 412 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 CREBL2O60519 120 aaPredicted RBP5.59□□□□□ -1.51
CLN3-223ENST00000566472 ZNF354AO60765 605 aaPredicted RBP5.59□□□□□ -1.51
CLN3-223ENST00000566472 RGS11O94810 467 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 TIAF1O95411 115 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 WNT11O96014 354 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 IGHG1P01857 330 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 ALDOBP05062 364 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 LPLP06858 475 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 ITGA5P08648 1049 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 H2BFMP0C1H6 154 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 MYF5P13349 255 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 HLA-DOBP13765 273 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 IL11P20809 199 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 DNASE1P24855 282 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 HTR2CP28335 458 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 LAP3P28838 519 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 HSD11B1P28845 292 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 PRSS3P35030 304 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 RPS27P42677 84 aaKnown RBP5.59□□□□□ -1.51
CLN3-223ENST00000566472 VEGFCP49767 419 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 GSK3AP49840 483 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 PER3P56645 1201 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 TAS2R19P59542 299 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 RPS15P62841 145 aaKnown RBP5.59□□□□□ -1.51
CLN3-223ENST00000566472 POU3F1Q03052 451 aaPredicted RBP5.59□□□□□ -1.51
CLN3-223ENST00000566472 C19orf57Q0VDD7 668 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 CAMK2DQ13557 499 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 ZMYND11Q15326 602 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 ETFDHQ16134 617 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 EXT1Q16394 746 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 KCNMB1Q16558 191 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 C2orf76Q3KRA6 126 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 LINC00303Q3SY05 128 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 THEM4Q5T1C6 240 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 PHF19Q5T6S3 580 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 STPG1Q5TH74 334 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 SFRP4Q6FHJ7 346 aaPredicted RBP5.59□□□□□ -1.51
CLN3-223ENST00000566472 ASPHD2Q6ICH7 369 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 RAB12Q6IQ22 244 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 KLHL24Q6TFL4 600 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 SHISA6Q6ZSJ9 500 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 DCXRQ7Z4W1 244 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 LYPD6Q86Y78 171 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 HIST2H2ABQ8IUE6 130 aaPredicted RBP5.59□□□□□ -1.51
CLN3-223ENST00000566472 SERPINA12Q8IW75 414 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 UEVLDQ8IX04 471 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 TMEM229BQ8NBD8 167 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 OR2M3Q8NG83 312 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 OR51D1Q8NGF3 324 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 OR1J4Q8NGS1 313 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 OR13C3Q8NGS6 347 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 OR6X1Q8NH79 312 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 POC1BQ8TC44 478 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 ELP5Q8TE02 316 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 GPX8Q8TED1 209 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 C11orf40Q8WZ69 217 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 EDAQ92838 391 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 ATOH1Q92858 354 aaPredicted RBP5.59□□□□□ -1.51
CLN3-223ENST00000566472 SLC25A44Q96H78 314 aaPredicted RBP5.59□□□□□ -1.51
CLN3-223ENST00000566472 ARL5BQ96KC2 179 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 UQCC2Q9BRT2 126 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 MRPL13Q9BYD1 178 aaKnown RBP5.59□□□□□ -1.51
CLN3-223ENST00000566472 TMPRSS13Q9BYE2 586 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 DEFB126Q9BYW3 111 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 OR10A4Q9H209 315 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 C1orf198Q9H425 327 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 PTGES2Q9H7Z7 377 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 METTL7AQ9H8H3 244 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 NOX3Q9HBY0 568 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 MYOZ1Q9NP98 299 aaPredicted RBP5.59□□□□□ -1.51
CLN3-223ENST00000566472 FAM206AQ9NX38 181 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 TAS2R4Q9NYW5 299 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 MED11Q9P086 117 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 B3GAT1Q9P2W7 334 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 UPB1Q9UBR1 384 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 FBLN5Q9UBX5 448 aa5.59□□□□□ -1.51
CLN3-223ENST00000566472 KLK11Q9UBX7 282 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms