RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 GINS4Q9BRT9 223 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 POTEKPQ9BYX7 375 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 ASF1BQ9NVP2 202 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 CNOT11Q9UKZ1 510 aaKnown RBP8.28□□□□□ -1.08
VPS39-205ENST00000562258 B9D1Q9UPM9 204 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 ZNF850A8MQ14 1090 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 PYCARD-AS1I3L0S3 204 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 HLA-DOBP13765 273 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 CRHBPP24387 322 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 NBL1P41271 181 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 RAD52P43351 418 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 CX3CR1P49238 355 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 MRPL19P49406 292 aaKnown RBP8.28□□□□□ -1.08
VPS39-205ENST00000562258 BMXP51813 675 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 MAP2K6P52564 334 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 SKP2Q13309 424 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 ZNF404Q494X3 552 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 TMEM69Q5SWH9 247 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 PXKQ7Z7A4 578 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 H1FXQ92522 213 aaKnown RBP8.28□□□□□ -1.08
VPS39-205ENST00000562258 UBL7Q96S82 380 aaPredicted RBP8.28□□□□□ -1.08
VPS39-205ENST00000562258 ATF6BQ99941 703 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 CST11Q9H112 138 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 ACOXLQ9NUZ1 547 aa8.28□□□□□ -1.08
VPS39-205ENST00000562258 DENRO43583 198 aaKnown RBP8.27□□□□□ -1.09
VPS39-205ENST00000562258 RGS9O75916 674 aaPredicted RBP8.27□□□□□ -1.09
VPS39-205ENST00000562258 YES1P07947 543 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 PIPP12273 146 aaPredicted RBP8.27□□□□□ -1.09
VPS39-205ENST00000562258 EDDM3BP56851 147 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 RNPS1Q15287 305 aaKnown RBP8.27□□□□□ -1.09
VPS39-205ENST00000562258 ZNF684Q5T5D7 378 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 TMEM205Q6UW68 189 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 C17orf82Q86X59 251 aaPredicted RBP8.27□□□□□ -1.09
VPS39-205ENST00000562258 FOXRED2Q8IWF2 684 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 GTPBP8Q8N3Z3 284 aaPredicted RBP8.27□□□□□ -1.09
VPS39-205ENST00000562258 ZNF565Q8N9K5 539 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 ASB17Q8WXJ9 295 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 PAK1IP1Q9NWT1 392 aaPredicted RBP8.27□□□□□ -1.09
VPS39-205ENST00000562258 OR52A1Q9UKL2 312 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 ITGB1BP2Q9UKP3 347 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 PTPRDP23468 1912 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 JMJD1CQ15652 2540 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 TRAPPC2LH3BP13 241 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 SLC2A2P11168 524 aaPredicted RBP8.27□□□□□ -1.09
VPS39-205ENST00000562258 APEHP13798 732 aaKnown RBP8.27□□□□□ -1.09
VPS39-205ENST00000562258 HTR1FP30939 366 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 GLP1RP43220 463 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 EDDM3AQ14507 147 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 RAB11BQ15907 218 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 ORAI1Q96D31 301 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 ZNF385AQ96PM9 386 aaKnown RBP8.27□□□□□ -1.09
VPS39-205ENST00000562258 OR14A2Q96R54 314 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 RHNO1Q9BSD3 238 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 ZMAT3Q9HA38 289 aaKnown RBP8.27□□□□□ -1.09
VPS39-205ENST00000562258 ACOT13Q9NPJ3 140 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 TINAGQ9UJW2 476 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 LRRK2Q5S007 2527 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 A0A1W2PQL4 384 aaPredicted RBP8.27□□□□□ -1.09
VPS39-205ENST00000562258 CLDN25C9JDP6 229 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 H0YJX3 145 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 NXPH2O95156 264 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 SERPINA5P05154 406 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 UCHL1P09936 223 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 ZNF32P17041 273 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 GSG1Q2KHT4 349 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 CXorf67Q86X51 503 aaPredicted RBP8.27□□□□□ -1.09
VPS39-205ENST00000562258 PLEKHJ1Q9NW61 149 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 ZNF226Q9NYT6 803 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 ZNF222Q9UK12 451 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 NAV2Q8IVL1 2488 aa8.27□□□□□ -1.09
VPS39-205ENST00000562258 TRBV5-3A0A0A0MS03 114 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 TEX13DA0A0J9YY54 714 aaPredicted RBP8.26□□□□□ -1.09
VPS39-205ENST00000562258 MEGF11A6BM72 1044 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 TUBAL3A6NHL2 446 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 SURF4O15260 269 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 SPRY3O43610 288 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 TSPAN2O60636 221 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 CTLA4P16410 223 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 IL11P20809 199 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 ATP1B3P54709 279 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 TMEM211Q6ICI0 200 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 DCDC5Q6ZRR9 648 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 SYT9Q86SS6 491 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 KIF18BQ86Y91 864 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 PLPP7Q8NBV4 271 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 S100ZQ8WXG8 99 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 ADIPOR1Q96A54 375 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 WFDC6Q9BQY6 131 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 TMEM43Q9BTV4 400 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 NTN4Q9HB63 628 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 PTTG3PQ9NZH4 202 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 STUB1Q9UNE7 303 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 PIGLQ9Y2B2 252 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 DOCK10Q96BY6 2186 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 OR6C68A6NDL8 312 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 C1QTNF9BB2RNN3 333 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 NPIPB8E9PQR5 432 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 ACTL6AO96019 429 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 C1QTNF9P0C862 333 aa8.26□□□□□ -1.09
VPS39-205ENST00000562258 HERV-K104P61576 105 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms