RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 NUP37Q8NFH4 326 aa11.77□□□□□ -0.53
SHMT2-228ENST00000557302 OR1J2Q8NGS2 313 aa11.77□□□□□ -0.53
SHMT2-228ENST00000557302 OR2T4Q8NH00 348 aa11.77□□□□□ -0.53
SHMT2-228ENST00000557302 AKR7LQ8NHP1 331 aa11.77□□□□□ -0.53
SHMT2-228ENST00000557302 FOXC2Q99958 501 aa11.77□□□□□ -0.53
SHMT2-228ENST00000557302 WACQ9BTA9 647 aa11.77□□□□□ -0.53
SHMT2-228ENST00000557302 OR2H1Q9GZK4 316 aa11.77□□□□□ -0.53
SHMT2-228ENST00000557302 GABARAPL1Q9H0R8 117 aa11.77□□□□□ -0.53
SHMT2-228ENST00000557302 CXorf56Q9H5V9 222 aa11.77□□□□□ -0.53
SHMT2-228ENST00000557302 CMC2Q9NRP2 79 aa11.77□□□□□ -0.53
SHMT2-228ENST00000557302 CA10Q9NS85 328 aa11.77□□□□□ -0.53
SHMT2-228ENST00000557302 POLR1DQ9Y2S0 133 aa11.77□□□□□ -0.53
SHMT2-228ENST00000557302 SPEF1Q9Y4P9 236 aa11.77□□□□□ -0.53
SHMT2-228ENST00000557302 RAI1Q7Z5J4 1906 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-228ENST00000557302 DSCAMO60469 2012 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 MPZL1O95297 269 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 HMGN1P05114 100 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 GAAP10253 952 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 ZNF35P13682 527 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 APEX1P27695 318 aaKnown RBP11.76□□□□□ -0.53
SHMT2-228ENST00000557302 APOBEC3AP31941 199 aaPredicted RBP11.76□□□□□ -0.53
SHMT2-228ENST00000557302 APLNRP35414 380 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 LSM6P62312 80 aaKnown RBP11.76□□□□□ -0.53
SHMT2-228ENST00000557302 PSG4Q00888 419 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 SCRN3Q0VDG4 424 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 SNTB2Q13425 540 aaKnown RBP11.76□□□□□ -0.53
SHMT2-228ENST00000557302 DAG1Q14118 895 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 CRMP1Q14194 572 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 GINS1Q14691 196 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 KCNMB1Q16558 191 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 ZSCAN26Q16670 478 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 TBC1D28Q2M2D7 210 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 ZNF362Q5T0B9 420 aaPredicted RBP11.76□□□□□ -0.53
SHMT2-228ENST00000557302 VHLLQ6RSH7 139 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.76□□□□□ -0.53
SHMT2-228ENST00000557302 DTX2Q86UW9 622 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 ALDH16A1Q8IZ83 802 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 PARP8Q8N3A8 854 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 ICA1LQ8NDH6 482 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 PROKR2Q8NFJ6 384 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 IGFBPL1Q8WX77 278 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 C11orf40Q8WZ69 217 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 DDOQ99489 341 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 PKP2Q99959 881 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 TRAF4Q9BUZ4 470 aaPredicted RBP11.76□□□□□ -0.53
SHMT2-228ENST00000557302 RBM4Q9BWF3 364 aaKnown RBP11.76□□□□□ -0.53
SHMT2-228ENST00000557302 TEX12Q9BXU0 123 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 CDH20Q9HBT6 801 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 KRT84Q9NSB2 600 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 OAZ3Q9UMX2 235 aa11.76□□□□□ -0.53
SHMT2-228ENST00000557302 SAC3D1A6NKF1 404 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 FAM171A2A8MVW0 826 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 VSTM5A8MXK1 200 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 GPANK1O95872 356 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 HLA-DQA2P01906 255 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 CCL2P13500 99 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 NR4A1P22736 598 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 STOMP27105 288 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 PYCR1P32322 319 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 SLC25A1P53007 311 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 CRISP1P54107 249 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 ESRRGP62508 458 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 NKX6-1P78426 367 aaPredicted RBP11.75□□□□□ -0.53
SHMT2-228ENST00000557302 DBPQ10586 325 aaPredicted RBP11.75□□□□□ -0.53
SHMT2-228ENST00000557302 AQP6Q13520 282 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 OTPQ5XKR4 325 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 KRT80Q6KB66 452 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 ACSM5Q6NUN0 579 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 ZNF774Q6NX45 483 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 CPEB3Q8NE35 698 aaKnown RBP11.75□□□□□ -0.53
SHMT2-228ENST00000557302 SLC26A10Q8NG04 563 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 OR10H5Q8NGA6 315 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 OR9Q1Q8NGQ5 310 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 GRIP2Q9C0E4 1043 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 WNT5BQ9H1J7 359 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 ZNF442Q9H7R0 627 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 SLC25A19Q9HC21 320 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 S100A14Q9HCY8 104 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 CBLN4Q9NTU7 201 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 ASH2LQ9UBL3 628 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 ENOPH1Q9UHY7 261 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 USF3Q68DE3 2245 aa11.75□□□□□ -0.53
SHMT2-228ENST00000557302 SGCEO43556 437 aa11.74□□□□□ -0.53
SHMT2-228ENST00000557302 MITFO75030 526 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-228ENST00000557302 SNAP29O95721 258 aa11.74□□□□□ -0.53
SHMT2-228ENST00000557302 CD8AP01732 235 aa11.74□□□□□ -0.53
SHMT2-228ENST00000557302 TFP02787 698 aa11.74□□□□□ -0.53
SHMT2-228ENST00000557302 PAICSP22234 425 aaKnown RBP11.74□□□□□ -0.53
SHMT2-228ENST00000557302 CCNOP22674 350 aa11.74□□□□□ -0.53
SHMT2-228ENST00000557302 IGFBP5P24593 272 aa11.74□□□□□ -0.53
SHMT2-228ENST00000557302 THBS4P35443 961 aa11.74□□□□□ -0.53
SHMT2-228ENST00000557302 SERPINF1P36955 418 aa11.74□□□□□ -0.53
SHMT2-228ENST00000557302 GDI2P50395 445 aaKnown RBP11.74□□□□□ -0.53
SHMT2-228ENST00000557302 RPS23P62266 143 aaKnown RBP11.74□□□□□ -0.53
SHMT2-228ENST00000557302 CDK5Q00535 292 aa11.74□□□□□ -0.53
SHMT2-228ENST00000557302 TEKQ02763 1124 aa11.74□□□□□ -0.53
SHMT2-228ENST00000557302 MEP1BQ16820 701 aa11.74□□□□□ -0.53
SHMT2-228ENST00000557302 KDM4DQ6B0I6 523 aa11.74□□□□□ -0.53
SHMT2-228ENST00000557302 LRRC75A-AS1Q8N1F1 130 aa11.74□□□□□ -0.53
SHMT2-228ENST00000557302 PAQR4Q8N4S7 273 aaPredicted RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms