RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 OR51L1Q8NGJ5 315 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 OR51G2Q8NGK0 314 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 HAVCR2Q8TDQ0 301 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 ST7LQ8TDW4 575 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 ASB17Q8WXJ9 295 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 ZMYND19Q96E35 227 aaPredicted RBP8.39□□□□□ -1.07
LIMA1-211ENST00000552338 CNN2Q99439 309 aaKnown RBP8.39□□□□□ -1.07
LIMA1-211ENST00000552338 COPS4Q9BT78 406 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 ZNF416Q9BWM5 594 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 C12orf49Q9H741 205 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 AMBNQ9NP70 447 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 COQ3Q9NZJ6 369 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 CRNNQ9UBG3 495 aaPredicted RBP8.39□□□□□ -1.07
LIMA1-211ENST00000552338 ERRFI1Q9UJM3 462 aaPredicted RBP8.39□□□□□ -1.07
LIMA1-211ENST00000552338 SLC5A6Q9Y289 635 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 EXOSC1Q9Y3B2 195 aaKnown RBP8.39□□□□□ -1.07
LIMA1-211ENST00000552338 LHFPL6Q9Y693 200 aa8.39□□□□□ -1.07
LIMA1-211ENST00000552338 SMG1Q96Q15 3661 aaKnown RBP8.39□□□□□ -1.07
LIMA1-211ENST00000552338 PRRC2CQ9Y520 2896 aaKnown RBP8.39□□□□□ -1.07
LIMA1-211ENST00000552338 TMEM129A0AVI4 362 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 CLEC18AA5D8T8 446 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 MAGEA13PA6NCF6 341 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 C12orf71A8MTZ7 269 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 FAM171A2A8MVW0 826 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 LRRTM2O43300 516 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 ZNF254O75437 659 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 SULT1C4O75897 302 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 MPZL1O95297 269 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 IGHV3-9P01782 118 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 LYNP07948 512 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 ADRA2AP08913 450 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 LIMS3P0CW19 117 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 LIMS4P0CW20 117 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 PSKH1P11801 424 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 ZNF823P16415 610 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 PCMT1P22061 227 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 OTX1P32242 354 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-211ENST00000552338 CDAP32320 146 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 CD79BP40259 229 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 UQCRFS1P47985 274 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 ASCL1P50553 236 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 PCBD1P61457 104 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 RPS7P62081 194 aaKnown RBP8.38□□□□□ -1.07
LIMA1-211ENST00000552338 ADAM8P78325 824 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 MVKQ03426 396 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 ZNF85Q03923 595 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 TFF3Q07654 80 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 ACSM1Q08AH1 577 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 TBCEQ15813 527 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-211ENST00000552338 CDONQ4KMG0 1287 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 TIMM23BQ5SRD1 257 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 SLC18B1Q6NT16 456 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 LYPD4Q6UWN0 246 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 CLEC18BQ6UXF7 455 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 B3GLCTQ6Y288 498 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 ZNF813Q6ZN06 617 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 DPY19L4Q7Z388 723 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 FJX1Q86VR8 437 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 SLC35F2Q8IXU6 374 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 SYS1Q8N2H4 156 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 UBE2J2Q8N2K1 259 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 NANOGP1Q8N7R0 232 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 WDR31Q8NA23 367 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 CLEC18CQ8NCF0 446 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 GJC3Q8NFK1 279 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 OR4F15Q8NGB8 312 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 OR6K6Q8NGW6 343 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 OR52N1Q8NH53 320 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 RNF133Q8WVZ7 376 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 NSMAFQ92636 917 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 FBXO17Q96EF6 278 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 RHNO1Q9BSD3 238 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 OPN3Q9H1Y3 402 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-211ENST00000552338 C1orf198Q9H425 327 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 ISYNA1Q9NPH2 558 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 PNRC2Q9NPJ4 139 aaKnown RBP8.38□□□□□ -1.07
LIMA1-211ENST00000552338 SLC17A5Q9NRA2 495 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 DDX28Q9NUL7 540 aaKnown RBP8.38□□□□□ -1.07
LIMA1-211ENST00000552338 ERVK13-1Q9NX77 482 aa8.38□□□□□ -1.07
LIMA1-211ENST00000552338 CAB39Q9Y376 341 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-211ENST00000552338 PRR14LQ5THK1 2151 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 A0A087WXM4 84 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 A0A1W2PPL8 197 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 A0A1W2PQL4 384 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-211ENST00000552338 TVP23AA6NH52 213 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 OR5H1A6NKK0 313 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 PTGES3LE9PB15 166 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 RGS10O43665 173 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 SELENOFO60613 162 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 ICMTO60725 284 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 UBL3O95164 117 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 ABHD16AO95870 558 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 GPANK1O95872 356 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 IGKV3-15P01624 115 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 PPP3CBP16298 524 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 JUNBP17275 347 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-211ENST00000552338 BMP5P22003 454 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 C21orf33P30042 268 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-211ENST00000552338 ARR3P36575 388 aa8.37□□□□□ -1.07
LIMA1-211ENST00000552338 PEX19P40855 299 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms