RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 SELENOTP62341 195 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 HMGN5P82970 282 aaKnown RBP3.37□□□□□ -1.87
LIMA1-205ENST00000550592 TGFBR3Q03167 851 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 TLE4Q04727 773 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 OR5I1Q13606 314 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 HERPUD1Q15011 391 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 WDR43Q15061 677 aaKnown RBP eCLIP3.37□□□□□ -1.87
LIMA1-205ENST00000550592 FAM78AQ5JUQ0 283 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 C1orf100Q5SVJ3 147 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 TIGD3Q6B0B8 471 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 ENPP6Q6UWR7 440 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 TMIGD1Q6UXZ0 262 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 UTS2BQ765I0 119 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 H2BFWTQ7Z2G1 175 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 MFSD6LQ8IWD5 586 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 ZNF740Q8NDX6 193 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 TSTD1Q8NFU3 115 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 TM4SF19Q96DZ7 209 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 CMTM7Q96FZ5 175 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 KCNA7Q96RP8 456 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 TRIM62Q9BVG3 475 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 ROPN1BQ9BZX4 212 aaPredicted RBP3.37□□□□□ -1.87
LIMA1-205ENST00000550592 ANKRD19PQ9H560 264 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 NARFLQ9H6Q4 476 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 AZI2Q9H6S1 392 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 PDFQ9HBH1 243 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 SEC14L3Q9UDX4 400 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 NBEAL1Q6ZS30 2694 aa3.37□□□□□ -1.87
LIMA1-205ENST00000550592 NF1P21359 2839 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 KNL1Q8NG31 2342 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 A0A1W2PPE3 182 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 H0Y8G0 127 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 SNX4O95219 450 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 ACTL6AO96019 429 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 UBTFL1P0CB47 393 aaPredicted RBP3.36□□□□□ -1.87
LIMA1-205ENST00000550592 ELK1P19419 428 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 FUT3P21217 361 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 GLP1RP43220 463 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 SULT1E1P49888 294 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 GPM6AP51674 278 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 DLX1P56177 255 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 KRTAP10-3P60369 221 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 DMC1Q14565 340 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 IMMTQ16891 758 aaKnown RBP3.36□□□□□ -1.87
LIMA1-205ENST00000550592 CTSL3PQ5NE16 218 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 UQCC3Q6UW78 93 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 TGIF2LXQ8IUE1 241 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 NUDCD3Q8IVD9 361 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 NEIL3Q8TAT5 605 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 FAM110BQ8TC76 370 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 SMARCD2Q92925 531 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 FBXO32Q969P5 355 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 TMEM101Q96IK0 257 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 ZNF578Q96N58 590 aaPredicted RBP3.36□□□□□ -1.87
LIMA1-205ENST00000550592 TSG101Q99816 390 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 P2RY13Q9BPV8 354 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 TMEM175Q9BSA9 504 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 SLC25A22Q9H936 323 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 PXMP2Q9NR77 195 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 TRAF3IP3Q9Y228 551 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 HIVEP1P15822 2718 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 KIF26AQ9ULI4 1882 aaPredicted RBP3.36□□□□□ -1.87
LIMA1-205ENST00000550592 MYO5AQ9Y4I1 1855 aaKnown RBP3.36□□□□□ -1.87
LIMA1-205ENST00000550592 SDK2Q58EX2 2172 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 WDR19Q8NEZ3 1342 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 ATRQ13535 2644 aa3.36□□□□□ -1.87
LIMA1-205ENST00000550592 PDCD11Q14690 1871 aaKnown RBP3.35□□□□□ -1.87
LIMA1-205ENST00000550592 CSPG4Q6UVK1 2322 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 OR5B21A6NL26 309 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 USP27XA6NNY8 438 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 A8MUA0 341 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 KRTAP4-16G5E9R7 235 aaPredicted RBP3.35□□□□□ -1.87
LIMA1-205ENST00000550592 ABCD4O14678 606 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 ETS2P15036 469 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 TBPP20226 339 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 CD1BP29016 333 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 RBMXP38159 391 aaKnown RBP3.35□□□□□ -1.87
LIMA1-205ENST00000550592 ARRB1P49407 418 aaPredicted RBP3.35□□□□□ -1.87
LIMA1-205ENST00000550592 NUP107P57740 925 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 ACTR3P61158 418 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 BST1Q10588 318 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 PLD1Q13393 1074 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 ARFRP1Q13795 201 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 GNMTQ14749 295 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 ZNF77Q15935 545 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 DGUOKQ16854 277 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 LINC00303Q3SY05 128 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 ZNF571Q7Z3V5 609 aaPredicted RBP3.35□□□□□ -1.87
LIMA1-205ENST00000550592 FAM228AQ86W67 206 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 SLC26A11Q86WA9 606 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 SLC34A3Q8N130 599 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 DCUN1D4Q92564 292 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 ITCHQ96J02 903 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 TCEANC2Q96MN5 208 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 MBOAT7Q96N66 472 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 ZNF641Q96N77 438 aaPredicted RBP3.35□□□□□ -1.87
LIMA1-205ENST00000550592 CNN2Q99439 309 aaKnown RBP3.35□□□□□ -1.87
LIMA1-205ENST00000550592 CHMP4BQ9H444 224 aaKnown RBP3.35□□□□□ -1.87
LIMA1-205ENST00000550592 NMRAL1Q9HBL8 299 aa3.35□□□□□ -1.87
LIMA1-205ENST00000550592 SUN2Q9UH99 717 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms