RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 SEC61A1P61619 476 aaKnown RBP7.25□□□□□ -1.25
PDLIM5-221ENST00000542407 LSM11P83369 360 aaKnown RBP eCLIP7.25□□□□□ -1.251e-7■■■■■ 32.8
PDLIM5-221ENST00000542407 FBXW9Q5XUX1 488 aa7.25□□□□□ -1.25
PDLIM5-221ENST00000542407 BRICD5Q6PL45 260 aa7.25□□□□□ -1.25
PDLIM5-221ENST00000542407 BHLHA15Q7RTS1 189 aaPredicted RBP7.25□□□□□ -1.25
PDLIM5-221ENST00000542407 SPEM1Q8N4L4 309 aa7.25□□□□□ -1.25
PDLIM5-221ENST00000542407 FAM89BQ8N5H3 189 aa7.25□□□□□ -1.25
PDLIM5-221ENST00000542407 C17orf47Q8NEP4 570 aa7.25□□□□□ -1.25
PDLIM5-221ENST00000542407 OR4D11Q8NGI4 311 aa7.25□□□□□ -1.25
PDLIM5-221ENST00000542407 DUSP19Q8WTR2 217 aa7.25□□□□□ -1.25
PDLIM5-221ENST00000542407 SPRYD4Q8WW59 207 aaPredicted RBP7.25□□□□□ -1.25
PDLIM5-221ENST00000542407 ACOT12Q8WYK0 555 aa7.25□□□□□ -1.25
PDLIM5-221ENST00000542407 OR14A2Q96R54 314 aa7.25□□□□□ -1.25
PDLIM5-221ENST00000542407 NRIP3Q9NQ35 241 aa7.25□□□□□ -1.25
PDLIM5-221ENST00000542407 ZCCHC3Q9NUD5 404 aaKnown RBP7.25□□□□□ -1.25
PDLIM5-221ENST00000542407 FAM86C1Q9NVL1 165 aa7.25□□□□□ -1.25
PDLIM5-221ENST00000542407 SEC14L3Q9UDX4 400 aa7.25□□□□□ -1.25
PDLIM5-221ENST00000542407 CLDN16Q9Y5I7 305 aa7.25□□□□□ -1.25
PDLIM5-221ENST00000542407 TRIOBPQ9H2D6 2365 aa7.25□□□□□ -1.25
PDLIM5-221ENST00000542407 TMEM129A0AVI4 362 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 SERPINA3P01011 423 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 HMGN2P05204 90 aaKnown RBP7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 CRYGCP07315 174 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 CHRM4P08173 479 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 GABRA1P14867 456 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 ST6GAL1P15907 406 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 PNLIPP16233 465 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 PPP3CBP16298 524 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 BCKDHBP21953 392 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 EPHA8P29322 1005 aaPredicted RBP7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 KHKP50053 298 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 AP3S2P59780 193 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 EXOSC6Q5RKV6 272 aaKnown RBP7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 OLIG3Q7RTU3 272 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 P4HA3Q7Z4N8 544 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 RANBP3LQ86VV4 465 aaPredicted RBP7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 OOSP2Q86WS3 158 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 TMEM52Q8NDY8 209 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 TMEM185AQ8NFB2 350 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 MOAP1Q96BY2 351 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 C16orf58Q96GQ5 468 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 TBX5Q99593 518 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 LYRM4Q9HD34 91 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 BCL2L10Q9HD36 194 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 P2RX2Q9UBL9 471 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 TCFL5Q9UL49 500 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 KCNE3Q9Y6H6 103 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 A0A1W2PPK0 400 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 OR6C68A6NDL8 312 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 SLC22A31A6NKX4 558 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 LRRN3E7EW58 273 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 CYR61O00622 381 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 GALR3O60755 368 aaPredicted RBP7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 ZIC2O95409 532 aaPredicted RBP7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 F10P00742 488 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 H1F0P07305 194 aaKnown RBP7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 ACP2P11117 423 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 HIST1H1BP16401 226 aaKnown RBP7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 ELAVL4P26378 380 aaKnown RBP7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 RFX3P48380 749 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 GIPRP48546 466 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 NXPH1P58417 271 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 MAP4K2Q12851 820 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 SCGB2A2Q13296 93 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 ZNF239Q16600 458 aaKnown RBP7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 NDUFAF6Q330K2 333 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 HBMQ6B0K9 141 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 PGBD2Q6P3X8 592 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 FAM199XQ6PEV8 388 aaPredicted RBP7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 HMGN2P46Q86SG4 172 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 MISPQ8IVT2 679 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 SERPINA12Q8IW75 414 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 TMEFF1Q8IYR6 380 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 ARIH2OSQ8N7S6 290 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 CCDC54Q8NEL0 328 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 OR7G2Q8NG99 324 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 OR56A1Q8NGH5 318 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 THAP4Q8WY91 577 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 LRRN3Q9H3W5 708 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 AUNIPQ9H7T9 357 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 PIPOXQ9P0Z9 390 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 KCNG2Q9UJ96 466 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 RCE1Q9Y256 329 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 MRPS18BQ9Y676 258 aaKnown RBP7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 SPACA6W5XKT8 324 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 DSPPQ9NZW4 1301 aa7.24□□□□□ -1.25
PDLIM5-221ENST00000542407 A0A1B0GW55 424 aa7.23□□□□□ -1.25
PDLIM5-221ENST00000542407 FAM86C2PA6NEL3 165 aa7.23□□□□□ -1.25
PDLIM5-221ENST00000542407 C19orf67A6NJJ6 358 aa7.23□□□□□ -1.25
PDLIM5-221ENST00000542407 TMEM200CA6NKL6 621 aa7.23□□□□□ -1.25
PDLIM5-221ENST00000542407 C5orf58C9J3I9 102 aa7.23□□□□□ -1.25
PDLIM5-221ENST00000542407 EMC8O43402 210 aa7.23□□□□□ -1.25
PDLIM5-221ENST00000542407 RNF13O43567 381 aa7.23□□□□□ -1.25
PDLIM5-221ENST00000542407 B3GALT2O43825 422 aa7.23□□□□□ -1.25
PDLIM5-221ENST00000542407 PPBPP02775 128 aa7.23□□□□□ -1.25
PDLIM5-221ENST00000542407 UCHL1P09936 223 aa7.23□□□□□ -1.25
PDLIM5-221ENST00000542407 DUX4L2P0CJ85 424 aa7.23□□□□□ -1.25
PDLIM5-221ENST00000542407 DUX4L3P0CJ86 424 aa7.23□□□□□ -1.25
PDLIM5-221ENST00000542407 DUX4L4P0CJ87 422 aa7.23□□□□□ -1.25
PDLIM5-221ENST00000542407 DUX4L5P0CJ88 424 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 131.2 ms