RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 ACSF3Q4G176 576 aaPredicted RBP15.64■□□□□ 0.09
CLIP1-215ENST00000541108 TSPO2Q5TGU0 170 aa15.64■□□□□ 0.09
CLIP1-215ENST00000541108 NSUN5P2Q63ZY6 315 aa15.64■□□□□ 0.09
CLIP1-215ENST00000541108 OR2A2Q6IF42 318 aa15.64■□□□□ 0.09
CLIP1-215ENST00000541108 DCXRQ7Z4W1 244 aa15.64■□□□□ 0.09
CLIP1-215ENST00000541108 ZSCAN2Q7Z7L9 614 aaPredicted RBP15.64■□□□□ 0.09
CLIP1-215ENST00000541108 OR2AJ1Q8NGZ0 328 aa15.64■□□□□ 0.09
CLIP1-215ENST00000541108 COQ7Q99807 217 aa15.64■□□□□ 0.09
CLIP1-215ENST00000541108 TTTY10Q9BZA0 68 aa15.64■□□□□ 0.09
CLIP1-215ENST00000541108 C1orf198Q9H425 327 aa15.64■□□□□ 0.09
CLIP1-215ENST00000541108 SIAEQ9HAT2 523 aa15.64■□□□□ 0.09
CLIP1-215ENST00000541108 GPR35Q9HC97 309 aa15.64■□□□□ 0.09
CLIP1-215ENST00000541108 ACOXLQ9NUZ1 547 aa15.64■□□□□ 0.09
CLIP1-215ENST00000541108 IKZF2Q9UKS7 526 aa15.64■□□□□ 0.09
CLIP1-215ENST00000541108 CLEC4AQ9UMR7 237 aa15.64■□□□□ 0.09
CLIP1-215ENST00000541108 STUB1Q9UNE7 303 aa15.64■□□□□ 0.09
CLIP1-215ENST00000541108 E9PI62 339 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 KRT33AO76009 404 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 HOXD4P09016 255 aaPredicted RBP15.63■□□□□ 0.09
CLIP1-215ENST00000541108 GALP22466 123 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 TDGF1P3P51864 188 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 LIPNQ5VXI9 398 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 OTPQ5XKR4 325 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 DMKNQ6E0U4 476 aaPredicted RBP15.63■□□□□ 0.09
CLIP1-215ENST00000541108 KRT77Q7Z794 578 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 CISD2Q8N5K1 135 aaKnown RBP15.63■□□□□ 0.09
CLIP1-215ENST00000541108 YIPF7Q8N8F6 280 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 NABP1Q96AH0 204 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 ALKBH3Q96Q83 286 aaPredicted RBP15.63■□□□□ 0.09
CLIP1-215ENST00000541108 AMELYQ99218 206 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 TM9SF2Q99805 663 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 SLX1AQ9BQ83 275 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 SLC25A18Q9H1K4 315 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 SLC7A10Q9NS82 523 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 LHFPL6Q9Y693 200 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 CHD8Q9HCK8 2581 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 PRRC2CQ9Y520 2896 aaKnown RBP15.63■□□□□ 0.09
CLIP1-215ENST00000541108 FIGNL2A6NMB9 653 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 HLA-DPB1P04440 258 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 OR8G3PP0DMU2 310 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 CRYBB2P43320 205 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 GUSBP1Q15486 140 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 TRAM1Q15629 374 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 SGCAQ16586 387 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 CD200R1LQ6Q8B3 271 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 FAM214BQ7L5A3 538 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 LINC00346Q8IVM7 164 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 ZNF100Q8IYN0 542 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 RNF133Q8WVZ7 376 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 ZNF837Q96EG3 531 aaPredicted RBP15.63■□□□□ 0.09
CLIP1-215ENST00000541108 OR51E2Q9H255 320 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 EMC7Q9NPA0 242 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 TMEM38BQ9NVV0 291 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 SLCO1C1Q9NYB5 712 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 ST6GALNAC2Q9UJ37 374 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 POLR1DQ9Y2S0 133 aa15.63■□□□□ 0.09
CLIP1-215ENST00000541108 SIRT4Q9Y6E7 314 aaPredicted RBP15.63■□□□□ 0.09
CLIP1-215ENST00000541108 PSMD9O00233 223 aa15.62■□□□□ 0.09
CLIP1-215ENST00000541108 ATE1O95260 518 aa15.62■□□□□ 0.09
CLIP1-215ENST00000541108 NR4A1P22736 598 aa15.62■□□□□ 0.09
CLIP1-215ENST00000541108 DCTDP32321 178 aa15.62■□□□□ 0.09
CLIP1-215ENST00000541108 ROR2Q01974 943 aaKnown RBP15.62■□□□□ 0.09
CLIP1-215ENST00000541108 KLRB1Q12918 225 aa15.62■□□□□ 0.09
CLIP1-215ENST00000541108 CDK5R1Q15078 307 aa15.62■□□□□ 0.09
CLIP1-215ENST00000541108 CEACAM16Q2WEN9 425 aa15.62■□□□□ 0.09
CLIP1-215ENST00000541108 ZNF585AQ6P3V2 769 aa15.62■□□□□ 0.09
CLIP1-215ENST00000541108 FDX2Q6P4F2 183 aa15.62■□□□□ 0.09
CLIP1-215ENST00000541108 LINGO2Q7L985 606 aa15.62■□□□□ 0.09
CLIP1-215ENST00000541108 NUFIP2Q7Z417 695 aaKnown RBP15.62■□□□□ 0.09
CLIP1-215ENST00000541108 ABHD12BQ7Z5M8 362 aaPredicted RBP15.62■□□□□ 0.09
CLIP1-215ENST00000541108 MED12LQ86YW9 2145 aa15.62■□□□□ 0.09
CLIP1-215ENST00000541108 MS4A15Q8N5U1 240 aa15.62■□□□□ 0.09
CLIP1-215ENST00000541108 ZFP41Q8N8Y5 198 aa15.62■□□□□ 0.09
CLIP1-215ENST00000541108 RPS4Y2Q8TD47 263 aa15.62■□□□□ 0.09
CLIP1-215ENST00000541108 RPL3LQ92901 407 aaKnown RBP15.62■□□□□ 0.09
CLIP1-215ENST00000541108 SNRNP40Q96DI7 357 aaKnown RBP15.62■□□□□ 0.09
CLIP1-215ENST00000541108 SMIM19Q96E16 107 aa15.62■□□□□ 0.09
CLIP1-215ENST00000541108 MAP6Q96JE9 813 aa15.62■□□□□ 0.09
CLIP1-215ENST00000541108 FOXB1Q99853 325 aa15.62■□□□□ 0.09
CLIP1-215ENST00000541108 WACQ9BTA9 647 aa15.62■□□□□ 0.09
CLIP1-215ENST00000541108 ZNF416Q9BWM5 594 aa15.62■□□□□ 0.09
CLIP1-215ENST00000541108 ELOVL3Q9HB03 270 aa15.62■□□□□ 0.09
CLIP1-215ENST00000541108 ASH2LQ9UBL3 628 aa15.62■□□□□ 0.09
CLIP1-215ENST00000541108 UPB1Q9UBR1 384 aa15.62■□□□□ 0.09
CLIP1-215ENST00000541108 GDF2Q9UK05 429 aaPredicted RBP15.62■□□□□ 0.09
CLIP1-215ENST00000541108 SSR3Q9UNL2 185 aa15.62■□□□□ 0.09
CLIP1-215ENST00000541108 CACNA1CQ13936 2221 aa15.62■□□□□ 0.09
CLIP1-215ENST00000541108 PNMA8CA0A1B0GUJ8 204 aa15.61■□□□□ 0.09
CLIP1-215ENST00000541108 MBD3L4A6NDZ8 208 aaPredicted RBP15.61■□□□□ 0.09
CLIP1-215ENST00000541108 MBD3L3A6NE82 208 aaPredicted RBP15.61■□□□□ 0.09
CLIP1-215ENST00000541108 MBD3L5A6NJ08 208 aaPredicted RBP15.61■□□□□ 0.09
CLIP1-215ENST00000541108 ZNF587BE7ETH6 402 aa15.61■□□□□ 0.09
CLIP1-215ENST00000541108 ZNHIT1O43257 154 aa15.61■□□□□ 0.09
CLIP1-215ENST00000541108 FGF9P31371 208 aaPredicted RBP15.61■□□□□ 0.09
CLIP1-215ENST00000541108 OR3A2P47893 321 aa15.61■□□□□ 0.09
CLIP1-215ENST00000541108 RIDAP52758 137 aaKnown RBP15.61■□□□□ 0.09
CLIP1-215ENST00000541108 AQP6Q13520 282 aa15.61■□□□□ 0.09
CLIP1-215ENST00000541108 LRRN1Q6UXK5 716 aa15.61■□□□□ 0.09
CLIP1-215ENST00000541108 RPTNQ6XPR3 784 aa15.61■□□□□ 0.09
CLIP1-215ENST00000541108 ZNF627Q7L945 461 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms