RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 NR4A1P22736 598 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 NOS3P29474 1203 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 CRABP1P29762 137 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 CDKN1AP38936 164 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 PCBD1P61457 104 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 HSF2Q03933 536 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 PLP2Q04941 152 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 COX10Q12887 443 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 SNTB2Q13425 540 aaKnown RBP13□□□□□ -0.33
CPSF1-208ENST00000532560 ENDOGQ14249 297 aaKnown RBP13□□□□□ -0.33
CPSF1-208ENST00000532560 EFNB3Q15768 340 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 ADIPOQQ15848 244 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 PABPC1L2AQ5JQF8 200 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 CLEC12AQ5QGZ9 265 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 LEG1Q6P5S2 330 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 DNM1P34Q6PK57 102 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 TMEM179BQ7Z7N9 219 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 GLB1L2Q8IW92 636 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 OR8D4Q8NGM9 314 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 FEVQ99581 238 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 NIPSNAP1Q9BPW8 284 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 WACQ9BTA9 647 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 ZNF416Q9BWM5 594 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 CACNG6Q9BXT2 260 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 NUAK2Q9H093 628 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 RACGAP1Q9H0H5 632 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 ZNF696Q9H7X3 374 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 SPEF1Q9Y4P9 236 aa13□□□□□ -0.33
CPSF1-208ENST00000532560 IQCMA0A1B0GVH7 501 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 H7C417 338 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 DEAF1O75398 565 aaPredicted RBP12.99□□□□□ -0.33
CPSF1-208ENST00000532560 RENP00797 406 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 TP53P04637 393 aaPredicted RBP12.99□□□□□ -0.33
CPSF1-208ENST00000532560 OR4A8P0C604 315 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 BMP4P12644 408 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 CALRP27797 417 aaKnown RBP12.99□□□□□ -0.33
CPSF1-208ENST00000532560 THBS4P35443 961 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 SERPINF1P36955 418 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 RPS23P62266 143 aaKnown RBP12.99□□□□□ -0.33
CPSF1-208ENST00000532560 GALK2Q01415 458 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 LRRC36Q1X8D7 754 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 SWI5Q1ZZU3 235 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 TBC1D28Q2M2D7 210 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 MST1LQ2TV78 715 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 KRT80Q6KB66 452 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 VHLLQ6RSH7 139 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 SYT9Q86SS6 491 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 LNX2Q8N448 690 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 OR1J2Q8NGS2 313 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 OR4K13Q8NH42 304 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 NMNAT3Q96T66 252 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 PKP2Q99959 881 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 MRPS26Q9BYN8 205 aaKnown RBP12.99□□□□□ -0.33
CPSF1-208ENST00000532560 OR2H1Q9GZK4 316 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 CDH20Q9HBT6 801 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 PDP1Q9P0J1 537 aaPredicted RBP12.99□□□□□ -0.33
CPSF1-208ENST00000532560 BAIAP2Q9UQB8 552 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 COA3Q9Y2R0 106 aaPredicted RBP12.99□□□□□ -0.33
CPSF1-208ENST00000532560 TIMM10BQ9Y5J6 103 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 ITPR3Q14573 2671 aa12.99□□□□□ -0.33
CPSF1-208ENST00000532560 IGLV1-36A0A0B4J1U3 117 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 C12orf71A8MTZ7 269 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 B9A039 149 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 DCTN6O00399 190 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 TIPRLO75663 272 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 SOX14O95416 240 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 IGHV4-39P01824 125 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 SCG5P05408 212 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 GAAP10253 952 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 APLNRP35414 380 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 LSM6P62312 80 aaKnown RBP12.98□□□□□ -0.33
CPSF1-208ENST00000532560 SNRPD2P62316 118 aaKnown RBP12.98□□□□□ -0.33
CPSF1-208ENST00000532560 PSG4Q00888 419 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.98□□□□□ -0.33
CPSF1-208ENST00000532560 ZBTB46Q86UZ6 589 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 ALDH16A1Q8IZ83 802 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 PAQR4Q8N4S7 273 aaPredicted RBP12.98□□□□□ -0.33
CPSF1-208ENST00000532560 NPEPL1Q8NDH3 523 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 CPEB3Q8NE35 698 aaKnown RBP12.98□□□□□ -0.33
CPSF1-208ENST00000532560 SDR9C7Q8NEX9 313 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 OR2T33Q8NG76 320 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 EME1Q96AY2 570 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 TSSK2Q96PF2 358 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 TMUB1Q9BVT8 246 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 TSSK6Q9BXA6 273 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 YIPF3Q9GZM5 350 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 WNT5BQ9H1J7 359 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 RERGLQ9H628 205 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 BARX1Q9HBU1 254 aaPredicted RBP12.98□□□□□ -0.33
CPSF1-208ENST00000532560 EMC7Q9NPA0 242 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 FBXO9Q9UK97 447 aaPredicted RBP12.98□□□□□ -0.33
CPSF1-208ENST00000532560 FKBP7Q9Y680 259 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 HIVEP1P15822 2718 aa12.98□□□□□ -0.33
CPSF1-208ENST00000532560 OR6C68A6NDL8 312 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 VSTM5A8MXK1 200 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 GPRIN2O60269 458 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 IGFBP1P08833 259 aaPredicted RBP12.97□□□□□ -0.33
CPSF1-208ENST00000532560 ANXA8P13928 327 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 STOMP27105 288 aa12.97□□□□□ -0.33
CPSF1-208ENST00000532560 APEX1P27695 318 aaKnown RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms