RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 A8MX80 341 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 A8MXK9 166 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 GPR89AB7ZAQ6 455 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 TBX19O60806 448 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 GPR89BP0CG08 455 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 CLUP10909 449 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 PRG2P13727 222 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 MDKP21741 143 aaPredicted RBP2.91□□□□□ -1.94
CD44-235ENST00000532339 PSMA5P28066 241 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 PRDX3P30048 256 aaKnown RBP2.91□□□□□ -1.94
CD44-235ENST00000532339 CAPGP40121 348 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 EMP2P54851 167 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 CYP24A1Q07973 514 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 GGTLC2Q14390 218 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 PCK2Q16822 640 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 BEND6Q5SZJ8 279 aaPredicted RBP2.91□□□□□ -1.94
CD44-235ENST00000532339 TAF3Q5VWG9 929 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 LRRC31Q6UY01 552 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 ZNF841Q6ZN19 808 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 HSD11B1LQ7Z5J1 315 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 RNF130Q86XS8 419 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 ZDHHC21Q8IVQ6 265 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 ZNF683Q8IZ20 524 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 TEX29Q8N6K0 151 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 ZNF525Q8N782 197 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 SLC5A11Q8WWX8 675 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 UPRTQ96BW1 309 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 C11orf24Q96F05 449 aaPredicted RBP2.91□□□□□ -1.94
CD44-235ENST00000532339 ATF6BQ99941 703 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 FAM173AQ9BQD7 235 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 CHRNA10Q9GZZ6 450 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 GNB4Q9HAV0 340 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 NTN4Q9HB63 628 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 DCAF13Q9NV06 445 aaKnown RBP2.91□□□□□ -1.94
CD44-235ENST00000532339 KLRF1Q9NZS2 232 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 CTSZQ9UBR2 303 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 ZNF282Q9UDV7 671 aaPredicted RBP2.91□□□□□ -1.94
CD44-235ENST00000532339 SEC14L4Q9UDX3 406 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 MLXQ9UH92 298 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 RPUSD1Q9UJJ7 312 aaKnown RBP2.91□□□□□ -1.94
CD44-235ENST00000532339 MGAT4AQ9UM21 535 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 AP4B1Q9Y6B7 739 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 HMCN2Q8NDA2 5059 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 MUC4Q99102 2169 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 ALMS1Q8TCU4 4167 aa2.91□□□□□ -1.94
CD44-235ENST00000532339 IGLV3-12A0A075B6K2 115 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 TEX48A0A1B0GUV7 120 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 A0A1W2PP18 115 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 WASHC1A8K0Z3 465 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 SRRM5B3KS81 715 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 K7EIL1 84 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 NDUFS8O00217 210 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 PES1O00541 588 aaKnown RBP2.9□□□□□ -1.95
CD44-235ENST00000532339 TM9SF1O15321 606 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 HCRTR1O43613 425 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 HCN1O60741 890 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 GSTT2P0CG29 244 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 GSTT2BP0CG30 244 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 UQCRBP14927 111 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 PRTN3P24158 256 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 PRPHP41219 470 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 GABRA4P48169 554 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 RIDAP52758 137 aaKnown RBP2.9□□□□□ -1.95
CD44-235ENST00000532339 DIO3P55073 304 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 BNIP1Q12981 228 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 TAF9Q16594 264 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 DEFB121Q5J5C9 76 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 SPOPLQ6IQ16 392 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 PMF1Q6P1K2 205 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 CENPUQ71F23 418 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 PRSS48Q7RTY5 328 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 TSEN54Q7Z6J9 526 aaKnown RBP2.9□□□□□ -1.95
CD44-235ENST00000532339 SLC26A11Q86WA9 606 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 PRSS58Q8IYP2 241 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 C4orf32Q8N8J7 132 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 OR52M1Q8NGK5 317 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 OR52J3Q8NH60 311 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 FBXO30Q8TB52 745 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 UBA3Q8TBC4 463 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 NANPQ8TBE9 248 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 NPRL2Q8WTW4 380 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 ZNF606Q8WXB4 792 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 NTAN1Q96AB6 310 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 CAPZA3Q96KX2 299 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 HSFY1Q96LI6 401 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 ZNF597Q96LX8 424 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 PLIN2Q99541 437 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 TIMM29Q9BSF4 260 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 ZSCAN5AQ9BUG6 496 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 SFXN3Q9BWM7 321 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 POLR1EQ9GZS1 481 aaKnown RBP2.9□□□□□ -1.95
CD44-235ENST00000532339 TUBB1Q9H4B7 451 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 SP140LQ9H930 580 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 MEAF6Q9HAF1 191 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 FAM60AQ9NP50 221 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 DDIT4Q9NX09 232 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 SLC23A2Q9UGH3 650 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 DHRS7Q9Y394 339 aa2.9□□□□□ -1.95
CD44-235ENST00000532339 EXOSC1Q9Y3B2 195 aaKnown RBP2.9□□□□□ -1.95
CD44-235ENST00000532339 AUP1Q9Y679 476 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms