RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 A0A1B0GUH1 482 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 IRGMA1A4Y4 181 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 WIPF3A6NGB9 483 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 FAM183AA6NL82 134 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 DCTN6O00399 190 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 DHHO43323 396 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 SLC16A7O60669 478 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 MRPS14O60783 128 aaKnown RBP6.51□□□□□ -1.37
CD44-228ENST00000528455 TMCC2O75069 709 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 ENTPD6O75354 484 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 CGAP01215 116 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 HRGP04196 525 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 TMIGD3P0DMS9 266 aaPredicted RBP6.51□□□□□ -1.37
CD44-228ENST00000528455 SPI1P17947 270 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 NPR2P20594 1047 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 SLC2A5P22732 501 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 LAP3P28838 519 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 AGTR1P30556 359 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 OPRM1P35372 400 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 SLC15A1P46059 708 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 MTNR1AP48039 350 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 CSNK1A1P48729 337 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 ZNF84P51523 738 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 CHN2P52757 468 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 HSF2Q03933 536 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 GLO1Q04760 184 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 RAB40BQ12829 278 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 LSAMPQ13449 338 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 APOFQ13790 326 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 MELKQ14680 651 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 NRN1LQ496H8 165 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 TEX30Q5JUR7 227 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 C10orf128Q5T292 105 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 LINC01590Q5TEZ4 76 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 FBXW9Q5XUX1 488 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 MTFR2Q6P444 385 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 UGT2A3Q6UWM9 527 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 PLXDC2Q6UX71 529 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 ZNF627Q7L945 461 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 WDFY1Q8IWB7 410 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 GPR137CQ8N3F9 429 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 CYB561A3Q8NBI2 242 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 SDR9C7Q8NEX9 313 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 BPIFB6Q8NFQ5 453 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 APH1BQ8WW43 257 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 IPCEF1Q8WWN9 437 aaPredicted RBP6.51□□□□□ -1.37
CD44-228ENST00000528455 RND1Q92730 232 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 APH1AQ96BI3 265 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 OTULINQ96BN8 352 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 STARD4Q96DR4 205 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 TSSK2Q96PF2 358 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 MYCBPQ99417 103 aaPredicted RBP6.51□□□□□ -1.37
CD44-228ENST00000528455 HCAR1Q9BXC0 346 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 RACGAP1Q9H0H5 632 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 SYT4Q9H2B2 425 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 OR51V1Q9H2C8 321 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 SLCO5A1Q9H2Y9 848 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 CDIP1Q9H305 208 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 PIGMQ9H3S5 423 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 DUSP21Q9H596 190 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 MARCH7Q9H992 704 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 RPRD1BQ9NQG5 326 aaKnown RBP6.51□□□□□ -1.37
CD44-228ENST00000528455 SLC7A10Q9NS82 523 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 CNOT2Q9NZN8 540 aaKnown RBP6.51□□□□□ -1.37
CD44-228ENST00000528455 UPB1Q9UBR1 384 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 PSORS1C1Q9UIG5 152 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 CLEC4AQ9UMR7 237 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 MYRFQ9Y2G1 1151 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 COA3Q9Y2R0 106 aaPredicted RBP6.51□□□□□ -1.37
CD44-228ENST00000528455 MEMO1Q9Y316 297 aa6.51□□□□□ -1.37
CD44-228ENST00000528455 MYO7BQ6PIF6 2116 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 DIDO1Q9BTC0 2240 aaKnown RBP6.5□□□□□ -1.37
CD44-228ENST00000528455 DOPEY1Q5JWR5 2465 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 INTS1Q8N201 2190 aaKnown RBP6.5□□□□□ -1.37
CD44-228ENST00000528455 NBPF19A0A087WUL8 3843 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 IGLV1-36A0A0B4J1U3 117 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 TRGV8A0A0C4DH27 118 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 A1L4Q6 167 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 EFCAB10A6NFE3 127 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 TRIM64A6NGJ6 449 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 CYSRT1A8MQ03 144 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 A8MXE2 369 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 PTGES3LE9PB15 166 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 J3QRE1 110 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 CCL21O00585 134 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 LRRTM2O43300 516 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 UPK3AO75631 287 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 TNFSF13O75888 250 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 KRT33AO76009 404 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 FADS2O95864 444 aaKnown RBP6.5□□□□□ -1.37
CD44-228ENST00000528455 DBHP09172 617 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 OR2T7P0C7T2 308 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 CLUP10909 449 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 PIPP12273 146 aaPredicted RBP6.5□□□□□ -1.37
CD44-228ENST00000528455 CRHBPP24387 322 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 FPR2P25090 351 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 DCKP27707 260 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 CDH11P55287 796 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 LSM6P62312 80 aaKnown RBP6.5□□□□□ -1.37
CD44-228ENST00000528455 MRPS34P82930 218 aaKnown RBP6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms