RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 ISXQ2M1V0 245 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 ZNF626Q68DY1 528 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 GPAT4Q86UL3 456 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 ZNF454Q8N9F8 522 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 SLC38A9Q8NBW4 561 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 HAVCR1Q96D42 359 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 MRPL48Q96GC5 212 aaKnown RBP14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 INTS14Q96SY0 518 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 TINAGL1Q9GZM7 467 aaPredicted RBP14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 SYNDIG1Q9H7V2 258 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 GPN1Q9HCN4 374 aaPredicted RBP14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 TEX51A0A1B0GUA7 166 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 ACOT7O00154 380 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 ALOX12BO75342 701 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 NDUFB6O95139 128 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 GP1BBP13224 206 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 M6PRP20645 277 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 GALNSP34059 522 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 EIF1AXP47813 144 aaKnown RBP14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 AP3S2P59780 193 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 SEZ6L2Q6UXD5 910 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 SLC29A4Q7RTT9 530 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 WDFY1Q8IWB7 410 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 LIPHQ8WWY8 451 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 SLC7A5P2Q9GIP4 190 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 POFUT1Q9H488 388 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 UBE2ZQ9H832 354 aaPredicted RBP14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 LHX6Q9UPM6 363 aa14.86□□□□□ -0.03
CCDC88B-210ENST00000494566 CACNA1EQ15878 2313 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 TMED7-TICAM2A0A0A6YYA0 188 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 DUX1O43812 170 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 OPN1LWP04000 364 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 KIR3DL2P43630 455 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 TAGLNQ01995 201 aaKnown RBP14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 SPOCK1Q08629 439 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 SLC22A6Q4U2R8 563 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 WDR38Q5JTN6 314 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 EEF1A1P5Q5VTE0 462 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 RPS4Y2Q8TD47 263 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 DAZLQ92904 295 aaKnown RBP14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 CMBLQ96DG6 245 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 ZNF75AQ96N20 296 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 ADAT1Q9BUB4 502 aaKnown RBP14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 MFFQ9GZY8 342 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 TMEM185BQ9H7F4 350 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 ELOVL3Q9HB03 270 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 SLC22A11Q9NSA0 550 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 OPN4Q9UHM6 478 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 MRTO4Q9UKD2 239 aaKnown RBP14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 VDAC3Q9Y277 283 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 TMED7Q9Y3B3 224 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 OR4C45A6NMZ5 311 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 TRIM77I1YAP6 450 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 TIAF1O95411 115 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 ECDO95905 644 aaPredicted RBP14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 CTLA4P16410 223 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 FBXW4P57775 412 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 GSG1LQ6UXU4 331 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 ADGRG3Q86Y34 549 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 PLXDC1Q8IUK5 500 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 OR51A2Q8NGJ7 313 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 OR1N1Q8NGS0 311 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 ZNF417Q8TAU3 575 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 CCDC74AQ96AQ1 378 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 MIB2Q96AX9 1013 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 WBP1Q96G27 269 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 ZNF587Q96SQ5 575 aaPredicted RBP14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 B3GNT4Q9C0J1 378 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 PFDN2Q9UHV9 154 aa14.85□□□□□ -0.03
CCDC88B-210ENST00000494566 TRAV36DV7A0A075B6V5 113 aa14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 F5H5P2 479 aa14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 TXNDC12O95881 172 aa14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 PNPP00491 289 aa14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 DCNP07585 359 aaKnown RBP14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 INSM1Q01101 510 aaPredicted RBP14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 SMAD4Q13485 552 aaKnown RBP14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 TAF13Q15543 124 aa14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 PLEKHA6Q9Y2H5 1048 aa14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 HRH3Q9Y5N1 445 aa14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 NPTNQ9Y639 398 aa14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 AUP1Q9Y679 476 aa14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 ALG1L2C9J202 215 aa14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 GLSO94925 669 aaPredicted RBP14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 C2orf76Q3KRA6 126 aa14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 HACD4Q5VWC8 232 aa14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 TSSK4Q6SA08 328 aa14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 KCTD20Q7Z5Y7 419 aa14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 LRRTM1Q86UE6 522 aa14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 GALNT16Q8N428 558 aa14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 D2HGDHQ8N465 521 aa14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 OR2AK2Q8NG84 335 aa14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 ARL5BQ96KC2 179 aa14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 PPA2Q9H2U2 334 aa14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 PHF3Q92576 2039 aaKnown RBP14.84□□□□□ -0.03
CCDC88B-210ENST00000494566 A0A1B0GX78 115 aa14.83□□□□□ -0.03
CCDC88B-210ENST00000494566 CCDC85CA6NKD9 419 aa14.83□□□□□ -0.03
CCDC88B-210ENST00000494566 GIMD1P0DJR0 217 aa14.83□□□□□ -0.03
CCDC88B-210ENST00000494566 PPP3CBP16298 524 aa14.83□□□□□ -0.03
CCDC88B-210ENST00000494566 PGCP20142 388 aa14.83□□□□□ -0.03
CCDC88B-210ENST00000494566 FMODQ06828 376 aa14.83□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms