RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 NDUFB2O95178 105 aa9.77□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 RAB3DO95716 219 aa9.77□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 PRSS3P35030 304 aa9.77□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 AKR1C3P42330 323 aa9.77□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 PCBP3P57721 371 aaKnown RBP9.77□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 MRPS10P82664 201 aaKnown RBP9.77□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 FOXK2Q01167 660 aa9.77□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 MANEAQ5SRI9 462 aa9.77□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 CLEC9AQ6UXN8 241 aa9.77□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 THSD4Q6ZMP0 1018 aa9.77□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 STPG2Q8N412 459 aa9.77□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 BCORP1Q8N888 145 aa9.77□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 OR14A16Q8NHC5 309 aa9.77□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 GCDHQ92947 438 aaPredicted RBP9.77□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 PRRG4Q9BZD6 226 aa9.77□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 ATG5Q9H1Y0 275 aa9.77□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 PPP1R3EQ9H7J1 279 aa9.77□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 AUNIPQ9H7T9 357 aa9.77□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 ISG20L2Q9H9L3 353 aaKnown RBP9.77□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 ZFP64Q9NPA5 681 aa9.77□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 MEMO1Q9Y316 297 aa9.77□□□□□ -0.84
MSH5-SAPCD1-207ENST00000493662 A0A0B4J203 849 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 A0A1B0GUH1 482 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 NPIPA5E9PKD4 350 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SULT1A3P0DMM9 295 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SULT1A4P0DMN0 295 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 GABRA1P14867 456 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 FPR3P25089 353 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 FAM53BQ14153 422 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SGCBQ16585 318 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 NKAIN1Q4KMZ8 207 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PDZD11Q5EBL8 140 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 C9orf135Q5VTT2 229 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 JAGN1Q8N5M9 183 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SIRT6Q8N6T7 355 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OR52B4Q8NGK2 314 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SLC2A12Q8TD20 617 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SLC6A7Q99884 636 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 TOLLIPQ9H0E2 274 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SHARPINQ9H0F6 387 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 UBQLN4Q9NRR5 601 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 NPIPA1Q9UND3 350 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 MFSD2BA6NFX1 497 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 IMPA2O14732 288 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SLC16A7O60669 478 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 AKR1C4P17516 323 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 G0S2P27469 103 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SERTAD2Q14140 314 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 NKPD1Q17RQ9 610 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 C1QL3Q5VWW1 255 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 MBOAT2Q6ZWT7 520 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 DPY19L4Q7Z388 723 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 NAXDQ8IW45 347 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ZNF595Q8IYB9 648 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 WDR89Q96FK6 387 aaPredicted RBP9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OR5B2Q96R09 309 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ABHD1Q96SE0 405 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 HRASLSQ9HDD0 168 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 FLRT3Q9NZU0 649 aa9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ZNF223Q9UK11 482 aaPredicted RBP9.77□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PLXNA4Q9HCM2 1894 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ZNF264O43296 627 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SELENOFO60613 162 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SCGNO76038 276 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 TACSTD2P09758 323 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 FGF9P31371 208 aaPredicted RBP9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ZNF41P51814 821 aaPredicted RBP9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ACTC1P68032 377 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ACTA1P68133 377 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 CCL7P80098 99 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 LURAP1LQ8IV03 231 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OR6N1Q8NGY5 312 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 NPRL2Q8WTW4 380 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 GHSRQ92847 366 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ZBTB8AQ96BR9 441 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 GPER1Q99527 375 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 C20orf24Q9BUV8 137 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 GHITMQ9H3K2 345 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PCDHB10Q9UN67 800 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 KCNIP3Q9Y2W7 256 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 R4GN57 208 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 C7orf66A4D0T2 115 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 LANCL1O43813 399 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 FBXO24O75426 580 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 MED6O75586 246 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 AKAIN1P0CW23 69 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 MAP3K8P41279 467 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 GLP1RP43220 463 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 MRPL19P49406 292 aaKnown RBP9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 CCR5P51681 352 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 FUT5Q11128 374 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 BATFQ16520 125 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 LRRTM1Q86UE6 522 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ARHGAP9Q9BRR9 750 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 NTMQ9P121 344 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 NPFFR2Q9Y5X5 522 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PLXNA3P51805 1871 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 CYTIPO60759 359 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SEMA7AO75326 666 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SFTPBP07988 381 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms