RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 NXF2Q9GZY0 626 aaKnown RBP16.79■□□□□ 0.28
SMC4-209ENST00000468653 POLE4Q9NR33 117 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 CENPMQ9NSP4 180 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 FRRS1LQ9P0K9 344 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 SPRR3Q9UBC9 169 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 CAMK2AQ9UQM7 478 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 SSUH2Q9Y2M2 353 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 ZNF281Q9Y2X9 895 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 LRP12Q9Y561 859 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 CELSR3Q9NYQ7 3312 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 CACNA1CQ13936 2221 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 ZNF254O75437 659 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 ZFPL1O95159 310 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 WNT11O96014 354 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 CPN1P15169 458 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 CALRP27797 417 aaKnown RBP16.79■□□□□ 0.28
SMC4-209ENST00000468653 NTF4P34130 210 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 OPRL1P41146 370 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 DYNC1I2Q13409 638 aaKnown RBP16.79■□□□□ 0.28
SMC4-209ENST00000468653 PAMR1Q6UXH9 720 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 HIST2H2ABQ8IUE6 130 aaPredicted RBP16.79■□□□□ 0.28
SMC4-209ENST00000468653 FNDC9Q8TBE3 224 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 HTRA1Q92743 480 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 WDYHV1Q96HA8 205 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 KCNS3Q9BQ31 491 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 BARHL1Q9BZE3 327 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 C1orf198Q9H425 327 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 B3GAT2Q9NPZ5 323 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 EMC3Q9P0I2 261 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 DNAJC13O75165 2243 aa16.79■□□□□ 0.28
SMC4-209ENST00000468653 IGKV3D-15A0A087WSY6 115 aa16.78■□□□□ 0.28
SMC4-209ENST00000468653 SC5DO75845 299 aa16.78■□□□□ 0.28
SMC4-209ENST00000468653 H2BFMP0C1H6 154 aa16.78■□□□□ 0.28
SMC4-209ENST00000468653 MSR1P21757 451 aa16.78■□□□□ 0.28
SMC4-209ENST00000468653 MYL9P24844 172 aa16.78■□□□□ 0.28
SMC4-209ENST00000468653 BMXP51813 675 aa16.78■□□□□ 0.28
SMC4-209ENST00000468653 HNRNPA0Q13151 305 aaKnown RBP16.78■□□□□ 0.28
SMC4-209ENST00000468653 ZNF544Q6NX49 715 aa16.78■□□□□ 0.28
SMC4-209ENST00000468653 DEGS2Q6QHC5 323 aa16.78■□□□□ 0.28
SMC4-209ENST00000468653 PLXDC2Q6UX71 529 aa16.78■□□□□ 0.28
SMC4-209ENST00000468653 GPR137CQ8N3F9 429 aa16.78■□□□□ 0.28
SMC4-209ENST00000468653 SLAMF6Q96DU3 332 aa16.78■□□□□ 0.28
SMC4-209ENST00000468653 MAP6Q96JE9 813 aa16.78■□□□□ 0.28
SMC4-209ENST00000468653 DCBLD2Q96PD2 775 aa16.78■□□□□ 0.28
SMC4-209ENST00000468653 COMMD4Q9H0A8 199 aa16.78■□□□□ 0.28
SMC4-209ENST00000468653 GTF2A1LQ9UNN4 478 aa16.78■□□□□ 0.28
SMC4-209ENST00000468653 NOSIPQ9Y314 301 aaKnown RBP16.78■□□□□ 0.28
SMC4-209ENST00000468653 LHFPL6Q9Y693 200 aa16.78■□□□□ 0.28
SMC4-209ENST00000468653 A0A1B0GTH9 108 aa16.77■□□□□ 0.28
SMC4-209ENST00000468653 SMIM30A4D0T7 59 aa16.77■□□□□ 0.28
SMC4-209ENST00000468653 GATBO75879 557 aaKnown RBP16.77■□□□□ 0.28
SMC4-209ENST00000468653 IGHG3P01860 377 aa16.77■□□□□ 0.28
SMC4-209ENST00000468653 EIF2S3P41091 472 aaKnown RBP16.77■□□□□ 0.28
SMC4-209ENST00000468653 RPS11P62280 158 aaKnown RBP eCLIP16.77■□□□□ 0.288e-17■■■■■ 578.9
SMC4-209ENST00000468653 YIF1BQ5BJH7 314 aa16.77■□□□□ 0.28
SMC4-209ENST00000468653 ZMAT1Q5H9K5 638 aa16.77■□□□□ 0.28
SMC4-209ENST00000468653 FAM27D1Q5T7N8 215 aa16.77■□□□□ 0.28
SMC4-209ENST00000468653 FDX2Q6P4F2 183 aa16.77■□□□□ 0.28
SMC4-209ENST00000468653 ZNF676Q8N7Q3 588 aa16.77■□□□□ 0.28
SMC4-209ENST00000468653 RNF133Q8WVZ7 376 aa16.77■□□□□ 0.28
SMC4-209ENST00000468653 TMEM45BQ96B21 275 aa16.77■□□□□ 0.28
SMC4-209ENST00000468653 NELFAQ9H3P2 528 aa16.77■□□□□ 0.28
SMC4-209ENST00000468653 CRNNQ9UBG3 495 aaPredicted RBP16.77■□□□□ 0.28
SMC4-209ENST00000468653 GDF2Q9UK05 429 aaPredicted RBP16.77■□□□□ 0.28
SMC4-209ENST00000468653 TMEM212A6NML5 194 aa16.77■□□□□ 0.27
SMC4-209ENST00000468653 MKRN2OSH3BPM6 223 aa16.77■□□□□ 0.27
SMC4-209ENST00000468653 RRP8O43159 456 aaKnown RBP16.77■□□□□ 0.27
SMC4-209ENST00000468653 MRPL33O75394 65 aaKnown RBP16.77■□□□□ 0.27
SMC4-209ENST00000468653 INHBBP09529 407 aa16.77■□□□□ 0.27
SMC4-209ENST00000468653 S100A5P33763 92 aa16.77■□□□□ 0.27
SMC4-209ENST00000468653 MTNR1BP49286 362 aa16.77■□□□□ 0.27
SMC4-209ENST00000468653 LSM6P62312 80 aaKnown RBP16.77■□□□□ 0.27
SMC4-209ENST00000468653 FOXL2NBQ6ZUU3 175 aa16.77■□□□□ 0.27
SMC4-209ENST00000468653 MCEMP1Q8IX19 187 aa16.77■□□□□ 0.27
SMC4-209ENST00000468653 S100ZQ8WXG8 99 aa16.77■□□□□ 0.27
SMC4-209ENST00000468653 C4orf45Q96LM5 186 aa16.77■□□□□ 0.27
SMC4-209ENST00000468653 OR14A2Q96R54 314 aa16.77■□□□□ 0.27
SMC4-209ENST00000468653 PPIL3Q9H2H8 161 aaKnown RBP16.77■□□□□ 0.27
SMC4-209ENST00000468653 ASH2LQ9UBL3 628 aa16.77■□□□□ 0.27
SMC4-209ENST00000468653 A0A075B6Q4 140 aa16.76■□□□□ 0.27
SMC4-209ENST00000468653 SHISA3A0PJX4 238 aa16.76■□□□□ 0.27
SMC4-209ENST00000468653 OR4C45A6NMZ5 311 aa16.76■□□□□ 0.27
SMC4-209ENST00000468653 ARL6IP5O75915 188 aa16.76■□□□□ 0.27
SMC4-209ENST00000468653 RNPS1Q15287 305 aaKnown RBP16.76■□□□□ 0.27
SMC4-209ENST00000468653 WDR38Q5JTN6 314 aa16.76■□□□□ 0.27
SMC4-209ENST00000468653 CFAP77Q6ZQR2 320 aa16.76■□□□□ 0.27
SMC4-209ENST00000468653 PRSS35Q8N3Z0 413 aa16.76■□□□□ 0.27
SMC4-209ENST00000468653 TEX19Q8NA77 164 aa16.76■□□□□ 0.27
SMC4-209ENST00000468653 CRLF2Q9HC73 371 aa16.76■□□□□ 0.27
SMC4-209ENST00000468653 HMG20AQ9NP66 347 aa16.76■□□□□ 0.27
SMC4-209ENST00000468653 PARPBPQ9NWS1 579 aa16.76■□□□□ 0.27
SMC4-209ENST00000468653 PEX16Q9Y5Y5 336 aa16.76■□□□□ 0.27
SMC4-209ENST00000468653 TNRC6AQ8NDV7 1962 aaKnown RBP16.75■□□□□ 0.27
SMC4-209ENST00000468653 APC2O95996 2303 aa16.75■□□□□ 0.27
SMC4-209ENST00000468653 CLDN25C9JDP6 229 aa16.75■□□□□ 0.27
SMC4-209ENST00000468653 KRT33AO76009 404 aa16.75■□□□□ 0.27
SMC4-209ENST00000468653 KIR3DL2P43630 455 aa16.75■□□□□ 0.27
SMC4-209ENST00000468653 CCR9P51686 369 aa16.75■□□□□ 0.27
SMC4-209ENST00000468653 TUSC5Q8IXB3 177 aa16.75■□□□□ 0.27
SMC4-209ENST00000468653 ZNF416Q9BWM5 594 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms