RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 ACTRT1Q8TDG2 376 aa2.23□□□□□ -2.05
VPS41-207ENST00000439468 GIMAP1Q8WWP7 306 aa2.23□□□□□ -2.05
VPS41-207ENST00000439468 SRSF12Q8WXF0 261 aaKnown RBP2.23□□□□□ -2.05
VPS41-207ENST00000439468 RASD2Q96D21 266 aa2.23□□□□□ -2.05
VPS41-207ENST00000439468 CEP170P1Q96L14 293 aa2.23□□□□□ -2.05
VPS41-207ENST00000439468 PANX1Q96RD7 426 aa2.23□□□□□ -2.05
VPS41-207ENST00000439468 SLC29A1Q99808 456 aa2.23□□□□□ -2.05
VPS41-207ENST00000439468 CCDC77Q9BR77 488 aa2.23□□□□□ -2.05
VPS41-207ENST00000439468 OR51M1Q9H341 326 aa2.23□□□□□ -2.05
VPS41-207ENST00000439468 RANBP3Q9H6Z4 567 aaPredicted RBP2.23□□□□□ -2.05
VPS41-207ENST00000439468 RPF2Q9H7B2 306 aaKnown RBP2.23□□□□□ -2.05
VPS41-207ENST00000439468 RBAKQ9NYW8 714 aaPredicted RBP2.23□□□□□ -2.05
VPS41-207ENST00000439468 STOX2Q9P2F5 926 aaPredicted RBP2.23□□□□□ -2.05
VPS41-207ENST00000439468 NUP50Q9UKX7 468 aa2.23□□□□□ -2.05
VPS41-207ENST00000439468 BAHCC1Q9P281 2608 aa2.23□□□□□ -2.05
VPS41-207ENST00000439468 PHRF1Q9P1Y6 1649 aaKnown RBP2.23□□□□□ -2.05
VPS41-207ENST00000439468 CRYBG1Q9Y4K1 1723 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 NACAE9PAV3 2078 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 DUOX2Q9NRD8 1548 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 BRCA1P38398 1863 aaKnown RBP2.22□□□□□ -2.05
VPS41-207ENST00000439468 BRCA2P51587 3418 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 EIF2AK4Q9P2K8 1649 aaKnown RBP2.22□□□□□ -2.05
VPS41-207ENST00000439468 PEX7O00628 323 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 RAB29O14966 203 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 KMOO15229 486 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 ZNF250P15622 560 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 NSG1P42857 185 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 TFPI2P48307 235 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 UCNP55089 124 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 CDH6P55285 790 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 PRMT2P55345 433 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 NUTF2P61970 127 aaKnown RBP2.22□□□□□ -2.05
VPS41-207ENST00000439468 YWHAGP61981 247 aaKnown RBP eCLIP2.22□□□□□ -2.05
VPS41-207ENST00000439468 ECH1Q13011 328 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 SRSF5Q13243 272 aaKnown RBP2.22□□□□□ -2.05
VPS41-207ENST00000439468 PON3Q15166 354 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 VPS26BQ4G0F5 336 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 PIGGQ5H8A4 983 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 VAX1Q5SQQ9 334 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 SLC8B1Q6J4K2 584 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 ANKRD26P1Q6NSI1 321 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 C6orf120Q7Z4R8 191 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 EID2Q8N6I1 236 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 FBXL13Q8NEE6 735 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 DUSP18Q8NEJ0 188 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 STMN2Q93045 179 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 ASB9Q96DX5 294 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 DUS3LQ96G46 650 aaKnown RBP2.22□□□□□ -2.05
VPS41-207ENST00000439468 SLC25A39Q9BZJ4 359 aaPredicted RBP2.22□□□□□ -2.05
VPS41-207ENST00000439468 CTPS2Q9NRF8 586 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 ZNF226Q9NYT6 803 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 PTTG3PQ9NZH4 202 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 NUFIP1Q9UHK0 495 aaKnown RBP2.22□□□□□ -2.05
VPS41-207ENST00000439468 N6AMT1Q9Y5N5 214 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 C10orf71Q711Q0 1435 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 KIF27Q86VH2 1401 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 LRP4O75096 1905 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 PARP4Q9UKK3 1724 aaKnown RBP2.22□□□□□ -2.05
VPS41-207ENST00000439468 SBF1O95248 1867 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 EYSQ5T1H1 3165 aa2.22□□□□□ -2.05
VPS41-207ENST00000439468 LAMA2P24043 3122 aaKnown RBP2.22□□□□□ -2.05
VPS41-207ENST00000439468 A0A096LNJ9 63 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 CTAGE15A4D2H0 777 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 NKX2-6A6NCS4 301 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 CCDC169A6NNP5 214 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 H3BNH8 94 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 LSM1O15116 133 aaKnown RBP2.21□□□□□ -2.06
VPS41-207ENST00000439468 CLOCKO15516 846 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 OR2J3O76001 311 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 IGKV3-11P04433 115 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 HOXC4P09017 264 aaPredicted RBP2.21□□□□□ -2.06
VPS41-207ENST00000439468 GNAO1P09471 354 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 PNMA6AP0CW24 399 aaPredicted RBP2.21□□□□□ -2.06
VPS41-207ENST00000439468 RPS2P15880 293 aaKnown RBP2.21□□□□□ -2.06
VPS41-207ENST00000439468 NOS1P29475 1434 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 SERPINB5P36952 375 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 TMED10P49755 219 aaKnown RBP2.21□□□□□ -2.06
VPS41-207ENST00000439468 CCNHP51946 323 aaPredicted RBP2.21□□□□□ -2.06
VPS41-207ENST00000439468 ACLYP53396 1101 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 SMARCB1Q12824 385 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 PPP1R7Q15435 360 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 CHRNA6Q15825 494 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 KCTD19Q17RG1 926 aaPredicted RBP2.21□□□□□ -2.06
VPS41-207ENST00000439468 XKR7Q5GH72 579 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 ARMC12Q5T9G4 340 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 OR52W1Q6IF63 320 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 LYPD2Q6UXB3 125 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 CTAGE6Q86UF2 777 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 ENTHD1Q8IYW4 607 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 ZNF786Q8N393 782 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 STPG2Q8N412 459 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 CEP112Q8N8E3 955 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 SPATA4Q8NEY3 305 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 RHEBL1Q8TAI7 183 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 ZNF502Q8TBZ5 544 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 SLC7A13Q8TCU3 470 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 ACMSDQ8TDX5 336 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 ELMO1Q92556 727 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 CCDC126Q96EE4 140 aa2.21□□□□□ -2.06
VPS41-207ENST00000439468 PKNOX2Q96KN3 472 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms