RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 CHMP6Q96FZ7 201 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 OXGR1Q96P68 337 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 ZNF251Q9BRH9 671 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 PATZ1Q9HBE1 687 aaKnown RBP3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 PDFQ9HBH1 243 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 BEX1Q9HBH7 125 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 MIEF1Q9NQG6 463 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 TMEM9Q9P0T7 183 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 DCDC2Q9UHG0 476 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 LGALS13Q9UHV8 139 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 MRM2Q9UI43 246 aaKnown RBP3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 PLLPQ9Y342 182 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 GOLT1BQ9Y3E0 138 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 URGCP-MRPS24S4R325 110 aa3.96□□□□□ -1.78
CCDC88A-206ENST00000430086 CDHR2Q9BYE9 1310 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 UNC13AQ9UPW8 1703 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 PRRC2AP48634 2157 aaKnown RBP3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 ADCY9O60503 1353 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 JCADQ9P266 1359 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 LYRM9A8MSI8 78 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 LOC110117498-PIK3R3F6TDL0 507 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 GFYI3L273 518 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 CDX4O14627 284 aaPredicted RBP3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 MGRN1O60291 552 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 PLEKHA8P1O95397 391 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 LDOC1O95751 146 aaPredicted RBP3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 LSM8O95777 96 aaKnown RBP3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 HBE1P02100 147 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 KLK3P07288 261 aaPredicted RBP3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 KRT7P08729 469 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 CTRB1P17538 263 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 ZP3P21754 424 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 DNASE1L1P49184 302 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 P2RY4P51582 365 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 STXBP1P61764 594 aaKnown RBP3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 ECH1Q13011 328 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 ATP6V1FQ16864 119 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 RPEL1Q2QD12 228 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 C5orf47Q569G3 176 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 ZNF57Q68EA5 555 aaPredicted RBP3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 TIGD3Q6B0B8 471 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 CTRB2Q6GPI1 263 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 ANKRD26P1Q6NSI1 321 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 ZNF546Q86UE3 836 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 ZNF677Q86XU0 584 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 MCOLN2Q8IZK6 566 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 NOXO1Q8NFA2 376 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 OR5B3Q8NH48 314 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 NEIL2Q969S2 332 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 ITCHQ96J02 903 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 ZFP3Q96NJ6 502 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 SERPINB11Q96P15 392 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 MS4A4EQ96PG1 132 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 MRPL45Q9BRJ2 306 aaKnown RBP3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 TIMM29Q9BSF4 260 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 NMUR2Q9GZQ4 415 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 SRRQ9GZT4 340 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 SIAEQ9HAT2 523 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 AGPAT4Q9NRZ5 378 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 FADS3Q9Y5Q0 445 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 FANCIQ9NVI1 1328 aa3.95□□□□□ -1.78
CCDC88A-206ENST00000430086 A0A1W2PNU3 283 aaPredicted RBP3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 TMEM213A2RRL7 107 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 FAM231BA6NCW3 169 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 LIN7AO14910 233 aaPredicted RBP3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 MPDU1O75352 247 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 SERF1AO75920 110 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 SERPINA5P05154 406 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 ACSM4P0C7M7 580 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 PGAM1P18669 254 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 TBPP20226 339 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 SYT1P21579 422 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 RFC3P40938 356 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 PTGDSP41222 190 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 UGT2B15P54855 530 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 OR2B6P58173 313 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 UBE2G2P60604 165 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 ATP6V0D1P61421 351 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 DPYSL3Q14195 570 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 GABRA6Q16445 453 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 TRIM40Q6P9F5 258 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 KRTAP11-1Q8IUC1 163 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 C9orf40Q8IXQ3 194 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 FTMTQ8N4E7 242 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 CYB561A3Q8NBI2 242 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 ZNF564Q8TBZ8 553 aaPredicted RBP3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 ANKRD7Q92527 254 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 TFGQ92734 400 aaPredicted RBP3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 PAGE5Q96GU1 130 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 CENPNQ96H22 339 aaPredicted RBP3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 CPB2Q96IY4 423 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 MAGEB18Q96M61 343 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 FAIM2Q9BWQ8 316 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 TM2D1Q9BX74 207 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 NAA50Q9GZZ1 169 aaKnown RBP3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 ZNF702PQ9H963 129 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 CAB39LQ9H9S4 337 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 EML4Q9HC35 981 aaKnown RBP3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 MRM3Q9HC36 420 aaKnown RBP3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 NECAP2Q9NVZ3 263 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms