RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 ABHD4Q8TB40 342 aa12.43□□□□□ -0.42
GPNMB-203ENST00000409458 TMEM45BQ96B21 275 aa12.43□□□□□ -0.42
GPNMB-203ENST00000409458 MAP6Q96JE9 813 aa12.43□□□□□ -0.42
GPNMB-203ENST00000409458 DACH2Q96NX9 599 aa12.43□□□□□ -0.42
GPNMB-203ENST00000409458 ALKBH3Q96Q83 286 aaPredicted RBP12.43□□□□□ -0.42
GPNMB-203ENST00000409458 CDADC1Q9BWV3 514 aa12.43□□□□□ -0.42
GPNMB-203ENST00000409458 MROQ9BYG7 248 aa12.43□□□□□ -0.42
GPNMB-203ENST00000409458 SNTG1Q9NSN8 517 aa12.43□□□□□ -0.42
GPNMB-203ENST00000409458 POLR1DQ9Y2S0 133 aa12.43□□□□□ -0.42
GPNMB-203ENST00000409458 LRP12Q9Y561 859 aa12.43□□□□□ -0.42
GPNMB-203ENST00000409458 ZFPL1O95159 310 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 SDC2P34741 201 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 RPS11P62280 158 aaKnown RBP eCLIP12.42□□□□□ -0.42
GPNMB-203ENST00000409458 MXD1Q05195 221 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 MFGE8Q08431 387 aaPredicted RBP12.42□□□□□ -0.42
GPNMB-203ENST00000409458 ZNF404Q494X3 552 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 FAM27D1Q5T7N8 215 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 CFAP77Q6ZQR2 320 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 LINGO2Q7L985 606 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 SIAH3Q8IW03 269 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 TUSC5Q8IXB3 177 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 PRSS35Q8N3Z0 413 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 OR10S1Q8NGN2 331 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 MCFD2Q8NI22 146 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 HAVCR2Q8TDQ0 301 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 RNF133Q8WVZ7 376 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 RGP1Q92546 391 aaPredicted RBP12.42□□□□□ -0.42
GPNMB-203ENST00000409458 NABP1Q96AH0 204 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 ZNF837Q96EG3 531 aaPredicted RBP12.42□□□□□ -0.42
GPNMB-203ENST00000409458 RBM24Q9BX46 236 aaKnown RBP12.42□□□□□ -0.42
GPNMB-203ENST00000409458 PRRG4Q9BZD6 226 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 BARHL1Q9BZE3 327 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 PPIL3Q9H2H8 161 aaKnown RBP12.42□□□□□ -0.42
GPNMB-203ENST00000409458 KCNN2Q9H2S1 579 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 FRRS1LQ9P0K9 344 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 GDF2Q9UK05 429 aaPredicted RBP12.42□□□□□ -0.42
GPNMB-203ENST00000409458 CLEC4AQ9UMR7 237 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 A0A1B0GVC2 190 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 SMIM30A4D0T7 59 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 RRP8O43159 456 aaKnown RBP12.42□□□□□ -0.42
GPNMB-203ENST00000409458 ZNHIT1O43257 154 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 TMCC2O75069 709 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 IL1AP01583 271 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 RIDAP52758 137 aaKnown RBP12.42□□□□□ -0.42
GPNMB-203ENST00000409458 WDR38Q5JTN6 314 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 CHMP1BQ7LBR1 199 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 MS4A15Q8N5U1 240 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 OR2G2Q8NGZ5 317 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 SLAMF6Q96DU3 332 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 MED18Q9BUE0 208 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 PRDM14Q9GZV8 571 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 NXF2Q9GZY0 626 aaKnown RBP12.42□□□□□ -0.42
GPNMB-203ENST00000409458 NELFAQ9H3P2 528 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 C1orf198Q9H425 327 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 EMC3Q9P0I2 261 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 FBXL3Q9UKT7 428 aa12.42□□□□□ -0.42
GPNMB-203ENST00000409458 NOSIPQ9Y314 301 aaKnown RBP12.42□□□□□ -0.42
GPNMB-203ENST00000409458 PHF3Q92576 2039 aaKnown RBP12.41□□□□□ -0.42
GPNMB-203ENST00000409458 MKRN2OSH3BPM6 223 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 AQP7O14520 342 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 GPR171O14626 319 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 GPRIN2O60269 458 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 SRSF10O75494 262 aaKnown RBP12.41□□□□□ -0.42
GPNMB-203ENST00000409458 PNPP00491 289 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 MSR1P21757 451 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 CALRP27797 417 aaKnown RBP12.41□□□□□ -0.42
GPNMB-203ENST00000409458 SOX6P35712 828 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 OPRL1P41146 370 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 KIR3DL2P43630 455 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 ZNF84P51523 738 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 SGCAQ16586 387 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 TBR1Q16650 682 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 ACSM3Q53FZ2 586 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 FDX2Q6P4F2 183 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 CEACAM19Q7Z692 300 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 ZFAND2BQ8WV99 257 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 SLC25A46Q96AG3 418 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 C4orf45Q96LM5 186 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 ZNF416Q9BWM5 594 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 TPK1Q9H3S4 243 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 CALHM2Q9HA72 323 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 SIAEQ9HAT2 523 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 BCO1Q9HAY6 547 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 CRLF2Q9HC73 371 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 ASH2LQ9UBL3 628 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 LHX6Q9UPM6 363 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 ZNF281Q9Y2X9 895 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 BSNQ9UPA5 3926 aa12.41□□□□□ -0.42
GPNMB-203ENST00000409458 DMXL2Q8TDJ6 3036 aa12.4□□□□□ -0.42
GPNMB-203ENST00000409458 OR4C45A6NMZ5 311 aa12.4□□□□□ -0.42
GPNMB-203ENST00000409458 ZNF724A8MTY0 619 aa12.4□□□□□ -0.42
GPNMB-203ENST00000409458 TGM6O95932 706 aa12.4□□□□□ -0.42
GPNMB-203ENST00000409458 SERPINA3P01011 423 aa12.4□□□□□ -0.42
GPNMB-203ENST00000409458 INHBBP09529 407 aa12.4□□□□□ -0.42
GPNMB-203ENST00000409458 CAV3P56539 151 aa12.4□□□□□ -0.42
GPNMB-203ENST00000409458 HNRNPA0Q13151 305 aaKnown RBP12.4□□□□□ -0.42
GPNMB-203ENST00000409458 ENDOGQ14249 297 aaKnown RBP12.4□□□□□ -0.42
GPNMB-203ENST00000409458 RNPS1Q15287 305 aaKnown RBP12.4□□□□□ -0.42
GPNMB-203ENST00000409458 YIF1BQ5BJH7 314 aa12.4□□□□□ -0.42
GPNMB-203ENST00000409458 GPR137CQ8N3F9 429 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms