RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 HSPB2Q16082 182 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 SGCBQ16585 318 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 MZT2AQ6P582 158 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 CCBE1Q6UXH8 406 aaPredicted RBP9.06□□□□□ -0.96
VPS53-202ENST00000389040 PXKQ7Z7A4 578 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 GDPD1Q8N9F7 314 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 OR5M9Q8NGP3 310 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 OR5M1Q8NGP8 315 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 MBD3L2Q8NHZ7 208 aaPredicted RBP9.06□□□□□ -0.96
VPS53-202ENST00000389040 RND1Q92730 232 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 SMIM19Q96E16 107 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 MRPL48Q96GC5 212 aaKnown RBP9.06□□□□□ -0.96
VPS53-202ENST00000389040 ALG12Q9BV10 488 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 MARCH7Q9H992 704 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 CLCF1Q9UBD9 225 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 TINAGQ9UJW2 476 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 GNG8Q9UK08 70 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 COPS3Q9UNS2 423 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 MOKQ9UQ07 419 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 MPDZO75970 2070 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 POLEQ07864 2286 aa9.06□□□□□ -0.96
VPS53-202ENST00000389040 A0A0J9YW62 118 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 FAM171A2A8MVW0 826 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 EIF1AYO14602 144 aaKnown RBP9.05□□□□□ -0.96
VPS53-202ENST00000389040 MAGEB4O15481 346 aaPredicted RBP9.05□□□□□ -0.96
VPS53-202ENST00000389040 OGG1O15527 345 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 HPGDSO60760 199 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 TMCC2O75069 709 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 FZD7O75084 574 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 IL18BPO95998 194 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 MT-ATP6P00846 226 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 SERPINA3P01011 423 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 IL2RAP01589 272 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 MYL9P24844 172 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 SHC1P29353 583 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 EIF1AXP47813 144 aaKnown RBP9.05□□□□□ -0.96
VPS53-202ENST00000389040 AGFG1P52594 562 aaKnown RBP9.05□□□□□ -0.96
VPS53-202ENST00000389040 SUCLG1P53597 346 aaKnown RBP9.05□□□□□ -0.96
VPS53-202ENST00000389040 CLDN20P56880 219 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 SIRPAP78324 504 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 SLC35A1P78382 337 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 SRYQ05066 204 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 CDK5R1Q15078 307 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 RNPS1Q15287 305 aaKnown RBP9.05□□□□□ -0.96
VPS53-202ENST00000389040 MESTQ5EB52 335 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 GPR139Q6DWJ6 353 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 RPL22L1Q6P5R6 122 aaKnown RBP9.05□□□□□ -0.96
VPS53-202ENST00000389040 CNIH2Q6PI25 160 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 NR2C2APQ86WQ0 139 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 OR10D3Q8NH80 312 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 MFSD8Q8NHS3 518 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 ACOT12Q8WYK0 555 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 PTDSS2Q9BVG9 487 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 ACOXLQ9NUZ1 547 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 ALKBH4Q9NXW9 302 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 ZNF629Q9UEG4 869 aaPredicted RBP9.05□□□□□ -0.96
VPS53-202ENST00000389040 A0A1W2PQ09 198 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 A0A1W2PRG6 482 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 TMEM72A0PK05 275 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 CLEC18AA5D8T8 446 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 WIPF3A6NGB9 483 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 SLC22A20A6NK97 555 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 SHISA8B8ZZ34 492 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 SULT2B1O00204 365 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 SEC14L5O43304 696 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 GLI4P10075 376 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 TFPIP10646 304 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 CEACAM8P31997 349 aaPredicted RBP9.05□□□□□ -0.96
VPS53-202ENST00000389040 SFTPDP35247 375 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 UQCRFS1P47985 274 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 GDI2P50395 445 aaKnown RBP9.05□□□□□ -0.96
VPS53-202ENST00000389040 H3F3AP84243 136 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 SCN1BQ07699 218 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 MYBPHQ13203 477 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 CCDC58Q4VC31 144 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 ACSM3Q53FZ2 586 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 PYDC2Q56P42 97 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 IDNKQ5T6J7 187 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 FAM27D1Q5T7N8 215 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 C1QL3Q5VWW1 255 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 RTL6Q6ICC9 239 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 METAP1DQ6UB28 335 aaPredicted RBP9.05□□□□□ -0.96
VPS53-202ENST00000389040 LYPD4Q6UWN0 246 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 CLEC18BQ6UXF7 455 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 PAMR1Q6UXH9 720 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 MAMDC2Q7Z304 686 aaPredicted RBP9.05□□□□□ -0.96
VPS53-202ENST00000389040 TPRA1Q86W33 373 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 UBQLNLQ8IYU4 475 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 CLEC18CQ8NCF0 446 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 ASB5Q8WWX0 329 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 TSSK2Q96PF2 358 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 OR5B2Q96R09 309 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 NPAS1Q99742 590 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 NAA11Q9BSU3 229 aaPredicted RBP9.05□□□□□ -0.96
VPS53-202ENST00000389040 RNF122Q9H9V4 155 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 TAS2R5Q9NYW4 299 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 COQ3Q9NZJ6 369 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 ERRFI1Q9UJM3 462 aaPredicted RBP9.05□□□□□ -0.96
VPS53-202ENST00000389040 ADAM30Q9UKF2 790 aa9.05□□□□□ -0.96
VPS53-202ENST00000389040 FAM215AQ9Y5M1 114 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms