RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 IL10RAQ13651 578 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 ZNF805Q5CZA5 627 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 ZDHHC21Q8IVQ6 265 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 IGSF21Q96ID5 467 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 TXNDC17Q9BRA2 123 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 ACTRT3Q9BYD9 372 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 A0A1B0GWJ7 208 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 PPP5D1E7EU14 171 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 SLC31A2O15432 143 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 APOA2P02652 100 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 TAC4Q86UU9 113 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 BORCS7Q96B45 105 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 FGGYQ96C11 551 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 TREX1Q9NSU2 369 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 SIDT1Q9NXL6 827 aaKnown RBP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 FCER1GP30273 86 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 GABRA4P48169 554 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 GDPD4Q6W3E5 623 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 NRARPQ7Z6K4 114 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 MRGPRX3Q96LB0 322 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 OPN3Q9H1Y3 402 aaPredicted RBP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 RASL12Q9NYN1 266 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 CHST2Q9Y4C5 530 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 CST2P09228 141 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 SEC61A1P61619 476 aaKnown RBP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 ZNF800Q2TB10 664 aaPredicted RBP eCLIP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 CST9Q5W186 159 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 SERPINA9Q86WD7 417 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 FCRL2Q96LA5 508 aaPredicted RBP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 CSPG4P5Q96PW8 444 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 FN3KRPQ9HA64 309 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 UBQLN4Q9NRR5 601 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 KCNIP2Q9NS61 270 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 KCNIP1Q9NZI2 227 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 DOK5Q9P104 306 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 RAB42Q8N4Z0 105 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 RAB7BQ96AH8 199 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 ENY2Q9NPA8 101 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 NBASA2RRP1 2371 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 LANCL1O43813 399 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 PTPRAP18433 802 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 KDELR2P33947 212 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 PPIGQ13427 754 aaKnown RBP eCLIP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 KIAA0141Q14154 515 aaPredicted RBP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 PLXDC2Q6UX71 529 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 SIAH3Q8IW03 269 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 OR5L1Q8NGL2 311 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 SMOC1Q9H4F8 434 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 SERINC1Q9NRX5 453 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 K7ESF4 209 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 GLT6D1Q7Z4J2 308 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 GTF3AQ92664 365 aaKnown RBP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 A6NNC1 897 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 SOD2P04179 222 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 HOXD4P09016 255 aaPredicted RBP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 SLC25A4P12235 298 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 CCR1P32246 355 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 MTNR1BP49286 362 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 C5orf46Q6UWT4 87 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 STPG3Q8N7X2 389 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 ARV1Q9H2C2 271 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 GGT3PA6NGU5 568 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 C1GALT1C1LP0DN25 315 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 LAMP2P13473 410 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 TPT1P13693 172 aaKnown RBP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 HOXB3P14651 431 aaPredicted RBP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 NPY4RP50391 375 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 CTU2Q2VPK5 515 aaKnown RBP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 GPR26Q8NDV2 337 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 TAPBPLQ9BX59 468 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 SPANXB1Q9NS25 103 aaPredicted RBP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 BACE2Q9Y5Z0 518 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 C5orf52A6NGY3 159 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 HTR5AP47898 357 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 RFX2P48378 723 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 CTBSQ01459 385 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 CCL14Q16627 93 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 NHLRC3Q5JS37 347 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 DHRS7BQ6IAN0 325 aaPredicted RBP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 STEAP1BQ6NZ63 245 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 SLC41A2Q96JW4 573 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 PRRT1Q99946 306 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 TCEAL2Q9H3H9 227 aaPredicted RBP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 STEAP1Q9UHE8 339 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 MTCH2Q9Y6C9 303 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 H7BY64 318 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 CDC14BO60729 498 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 PRAMEF13Q5VWM6 474 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 FBXW5Q969U6 566 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 PRAP1Q96NZ9 151 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 NPY6RQ99463 290 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 PITPNC1Q9UKF7 332 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 KCNE3Q9Y6H6 103 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 BLACEA4D250 179 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 PRAMEF2O60811 474 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 EIF4EBP2Q13542 120 aaPredicted RBP3.25□□□□□ -1.89
SYNE1-201ENST00000341594 FRRS1Q6ZNA5 592 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 TMEM156Q8N614 296 aa3.25□□□□□ -1.89
SYNE1-201ENST00000341594 PLPP5Q8NEB5 264 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms