RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 GASTP01350 101 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 CST2P09228 141 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 APEHP13798 732 aaKnown RBP13.64□□□□□ -0.23
CLN3-201ENST00000333496 APEX1P27695 318 aaKnown RBP13.64□□□□□ -0.23
CLN3-201ENST00000333496 GLRXP35754 106 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 RPS6KA3P51812 740 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 PSG4Q00888 419 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 ENDOGQ14249 297 aaKnown RBP13.64□□□□□ -0.23
CLN3-201ENST00000333496 LRRC36Q1X8D7 754 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 PABPC1L2AQ5JQF8 200 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 UGT2A3Q6UWM9 527 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 FOXN4Q96NZ1 517 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 DOK1Q99704 481 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 NUAK2Q9H093 628 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 KCNN2Q9H2S1 579 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 EGLN3Q9H6Z9 239 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 POLE4Q9NR33 117 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 ARMC1Q9NVT9 282 aa13.64□□□□□ -0.23
CLN3-201ENST00000333496 DCTN6O00399 190 aa13.63□□□□□ -0.23
CLN3-201ENST00000333496 ARPC3O15145 178 aa13.63□□□□□ -0.23
CLN3-201ENST00000333496 LY6HO94772 140 aa13.63□□□□□ -0.23
CLN3-201ENST00000333496 IGFBP1P08833 259 aaPredicted RBP13.63□□□□□ -0.23
CLN3-201ENST00000333496 BMP4P12644 408 aa13.63□□□□□ -0.23
CLN3-201ENST00000333496 MSR1P21757 451 aa13.63□□□□□ -0.23
CLN3-201ENST00000333496 SLC6A6P31641 620 aa13.63□□□□□ -0.23
CLN3-201ENST00000333496 CHN2P52757 468 aa13.63□□□□□ -0.23
CLN3-201ENST00000333496 SNRPD2P62316 118 aaKnown RBP13.63□□□□□ -0.23
CLN3-201ENST00000333496 DBPQ10586 325 aaPredicted RBP13.63□□□□□ -0.23
CLN3-201ENST00000333496 ADCK1Q86TW2 530 aa13.63□□□□□ -0.23
CLN3-201ENST00000333496 SVOPLQ8N434 492 aa13.63□□□□□ -0.23
CLN3-201ENST00000333496 LINC00471Q8N535 108 aa13.63□□□□□ -0.23
CLN3-201ENST00000333496 AKR7LQ8NHP1 331 aa13.63□□□□□ -0.23
CLN3-201ENST00000333496 TSSK2Q96PF2 358 aa13.63□□□□□ -0.23
CLN3-201ENST00000333496 SORCS2Q96PQ0 1159 aa13.63□□□□□ -0.23
CLN3-201ENST00000333496 ZNF416Q9BWM5 594 aa13.63□□□□□ -0.23
CLN3-201ENST00000333496 CHID1Q9BWS9 393 aa13.63□□□□□ -0.23
CLN3-201ENST00000333496 REEP1Q9H902 201 aa13.63□□□□□ -0.23
CLN3-201ENST00000333496 BARX1Q9HBU1 254 aaPredicted RBP13.63□□□□□ -0.23
CLN3-201ENST00000333496 EMC7Q9NPA0 242 aa13.63□□□□□ -0.23
CLN3-201ENST00000333496 CCNB1IP1Q9NPC3 277 aa13.63□□□□□ -0.23
CLN3-201ENST00000333496 SAMHD1Q9Y3Z3 626 aaKnown RBP13.63□□□□□ -0.23
CLN3-201ENST00000333496 IQCMA0A1B0GVH7 501 aa13.62□□□□□ -0.23
CLN3-201ENST00000333496 H0YJX3 145 aa13.62□□□□□ -0.23
CLN3-201ENST00000333496 SLC16A7O60669 478 aa13.62□□□□□ -0.23
CLN3-201ENST00000333496 CCNB2O95067 398 aa13.62□□□□□ -0.23
CLN3-201ENST00000333496 SNAP29O95721 258 aa13.62□□□□□ -0.23
CLN3-201ENST00000333496 HIST1H1CP16403 213 aaKnown RBP13.62□□□□□ -0.23
CLN3-201ENST00000333496 NUDT6P53370 316 aa13.62□□□□□ -0.23
CLN3-201ENST00000333496 GALK2Q01415 458 aa13.62□□□□□ -0.23
CLN3-201ENST00000333496 HSF2Q03933 536 aa13.62□□□□□ -0.23
CLN3-201ENST00000333496 PLP2Q04941 152 aa13.62□□□□□ -0.23
CLN3-201ENST00000333496 MICAQ29983 383 aa13.62□□□□□ -0.23
CLN3-201ENST00000333496 OTPQ5XKR4 325 aa13.62□□□□□ -0.23
CLN3-201ENST00000333496 MRPL24Q96A35 216 aaKnown RBP13.62□□□□□ -0.23
CLN3-201ENST00000333496 PKP2Q99959 881 aa13.62□□□□□ -0.23
CLN3-201ENST00000333496 IFT27Q9BW83 186 aa13.62□□□□□ -0.23
CLN3-201ENST00000333496 MRPL37Q9BZE1 423 aaKnown RBP13.62□□□□□ -0.23
CLN3-201ENST00000333496 PLA2G12AQ9BZM1 189 aa13.62□□□□□ -0.23
CLN3-201ENST00000333496 WNT5BQ9H1J7 359 aa13.62□□□□□ -0.23
CLN3-201ENST00000333496 C1orf198Q9H425 327 aa13.62□□□□□ -0.23
CLN3-201ENST00000333496 IL20Q9NYY1 176 aa13.62□□□□□ -0.23
CLN3-201ENST00000333496 COA3Q9Y2R0 106 aaPredicted RBP13.62□□□□□ -0.23
CLN3-201ENST00000333496 CMAHPQ9Y471 501 aa13.62□□□□□ -0.23
CLN3-201ENST00000333496 SPEF1Q9Y4P9 236 aa13.62□□□□□ -0.23
CLN3-201ENST00000333496 MTORP42345 2549 aa13.62□□□□□ -0.23
CLN3-201ENST00000333496 LOC100509620A0A075B734 347 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 VSTM5A8MXK1 200 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 SMAD7O15105 426 aaKnown RBP13.61□□□□□ -0.23
CLN3-201ENST00000333496 MPZL1O95297 269 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 CST1P01037 141 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 PTHP01270 115 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 FAM157BP0CG42 384 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 STOMP27105 288 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 GUCA1AP43080 201 aaPredicted RBP13.61□□□□□ -0.23
CLN3-201ENST00000333496 EFNA4P52798 201 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 TBC1D28Q2M2D7 210 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 TMEM179BQ7Z7N9 219 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 BIVMQ86UB2 503 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 LRP11Q86VZ4 500 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 ZCCHC24Q8N2G6 241 aaKnown RBP13.61□□□□□ -0.23
CLN3-201ENST00000333496 ZNF525Q8N782 197 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 AQP11Q8NBQ7 271 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 PAPD5Q8NDF8 572 aaKnown RBP13.61□□□□□ -0.23
CLN3-201ENST00000333496 OR8D4Q8NGM9 314 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 OR4K13Q8NH42 304 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 POM121L2Q96KW2 1035 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 NMNAT3Q96T66 252 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 OR2H1Q9GZK4 316 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 RERGLQ9H628 205 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 CDH20Q9HBT6 801 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 NDUFA13Q9P0J0 144 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 RNF223E7ERA6 249 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 KHDRBS3O75525 346 aaKnown RBP13.61□□□□□ -0.23
CLN3-201ENST00000333496 TIPRLO75663 272 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 GPANK1O95872 356 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 F12P00748 615 aaPredicted RBP13.61□□□□□ -0.23
CLN3-201ENST00000333496 TP53P04637 393 aaPredicted RBP13.61□□□□□ -0.23
CLN3-201ENST00000333496 APLNRP35414 380 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 PPOXP50336 477 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 CLEC12AQ5QGZ9 265 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms