RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 FBXO34Q9NWN3 711 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 ZNF320A2RRD8 509 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 CCKARP32238 428 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 EIF1P41567 113 aaKnown RBP12.76□□□□□ -0.37
CSPG4-201ENST00000308508 TMEM97Q5BJF2 176 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 CTRCQ99895 268 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 LIN7CQ9NUP9 197 aaKnown RBP12.76□□□□□ -0.37
CSPG4-201ENST00000308508 PRSS38A1L453 326 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 CLEC2LP0C7M8 214 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 RHOUQ7L0Q8 258 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 LHX4Q969G2 390 aa12.76□□□□□ -0.37
CSPG4-201ENST00000308508 CD37P11049 281 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 PPP1CBP62140 327 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 PRDX1Q06830 199 aaKnown RBP12.75□□□□□ -0.37
CSPG4-201ENST00000308508 OR1J1Q8NGS3 322 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 NECTIN4Q96NY8 510 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 TMX2-CTNND1H3BSU7 103 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 MT-ATP6P00846 226 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 ALOX5APP20292 161 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 AKR1E2Q96JD6 320 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 ZNF207O43670 478 aaKnown RBP12.75□□□□□ -0.37
CSPG4-201ENST00000308508 COX5AP20674 150 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 VHLLQ6RSH7 139 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 SELENOFO60613 162 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 RRASP10301 218 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 RBPJQ06330 500 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 AGBL4Q5VU57 503 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 DGAT2L6Q6ZPD8 337 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 GDPD3Q7L5L3 318 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 LINC00346Q8IVM7 164 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 PCYT2Q99447 389 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 TEX50A0A1B0GTY4 177 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 A0A1W2PPQ1 181 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 EDN3P14138 238 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 LCN15Q6UWW0 184 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 DCXRQ7Z4W1 244 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 PCM1Q15154 2024 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 CSNK1DP48730 415 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 EDDM3BP56851 147 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 ZNF154Q13106 437 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 SLC35G1Q2M3R5 365 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 OR2M7Q8NG81 312 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 CXorf58Q96LI9 332 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 ULBP3Q9BZM4 244 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 BCO1Q9HAY6 547 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 LOC102723971A0A1B0GUV8 181 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 CEBPEQ15744 281 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 RTL8BQ17RB0 113 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 C9orf135Q5VTT2 229 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 OR10P1Q8NGE3 313 aa12.75□□□□□ -0.37
CSPG4-201ENST00000308508 AKAP12Q02952 1782 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 PRAMEF25A6NGN4 478 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 DRD1P21728 446 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 HIST1H3AP68431 136 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 PRAMEF5Q5TYX0 476 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 PRAMEF6Q5VXH4 476 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 DOK3Q7L591 496 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 MFSD4AQ8N468 514 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 LRRC15Q8TF66 581 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 CHAC2Q8WUX2 184 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 CIB3Q96Q77 187 aaPredicted RBP12.74□□□□□ -0.37
CSPG4-201ENST00000308508 C1QTNF3Q9BXJ4 246 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 UTS2O95399 124 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 SMIM18P0DKX4 95 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 COL9A2Q14055 689 aaPredicted RBP12.74□□□□□ -0.37
CSPG4-201ENST00000308508 TBC1D28Q2M2D7 210 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 SPANXN5Q5MJ07 72 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 OR51H1Q8NH63 302 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 PIGQQ9BRB3 760 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 UBQLN3Q9H347 655 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 ACOXLQ9NUZ1 547 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 PRSS21Q9Y6M0 314 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 ACHEP22303 614 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 PLXDC2Q6UX71 529 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 UBTD2Q8WUN7 234 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 M0QZQ0 153 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 RAB27BO00194 218 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 SLC10A3P09131 477 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 TEAD1P28347 426 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 LGALS4P56470 323 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 CORO6Q6QEF8 472 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 AQP7P3A6NL99 342 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 DRGXA6NNA5 263 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 OR7C2O60412 319 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 PCSK6P29122 969 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 SSBP1Q04837 148 aaKnown RBP12.74□□□□□ -0.37
CSPG4-201ENST00000308508 BAP18Q8IXM2 172 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 USP22Q9UPT9 525 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 TMED7-TICAM2A0A0A6YYA0 188 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 SYT14P1Q58G82 188 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 C11orf42Q8N5U0 333 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 TMED7Q9Y3B3 224 aa12.74□□□□□ -0.37
CSPG4-201ENST00000308508 ZNF814B7Z6K7 855 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 RPA2P15927 270 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 HES1Q14469 280 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 ZNF528Q3MIS6 628 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 RABEPKQ7Z6M1 372 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 SLC39A7Q92504 469 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 KNDC1Q76NI1 1749 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 ACOT8O14734 319 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms