RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 OR4D1Q15615 310 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 PRAMEF20Q5VT98 475 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 SYPL2Q5VXT5 272 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 CISD2Q8N5K1 135 aaKnown RBP4.83□□□□□ -1.64
SCN1A-201ENST00000303395 LINC01465Q8N7H1 131 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 GPR152Q8TDT2 470 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 PP6455Q8WZ26 134 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 ANAPC16Q96DE5 110 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 SLC6A18Q96N87 628 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 DPH3P1Q9H4G8 78 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 UBQLN4Q9NRR5 601 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 TNFRSF10CO14798 259 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 IGHA2P01877 340 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 LAMP1P11279 417 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 POU3F4P49335 361 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 TCTAP57738 103 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 LY6KQ17RY6 165 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 TMEM128Q5BJH2 165 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 FAM26DQ5JW98 314 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 LEG1Q6P5S2 330 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 CD200R1LQ6Q8B3 271 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 NUP37Q8NFH4 326 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 OR14A16Q8NHC5 309 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 TMEM208Q9BTX3 173 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 P2RY12Q9H244 342 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 FBXL2Q9UKC9 423 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 PCDHGC4Q9Y5F7 938 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 LRRC3CA6NJW4 275 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 H3BSH0 61 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 SURF4O15260 269 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 FBLP22087 321 aaKnown RBP4.83□□□□□ -1.64
SCN1A-201ENST00000303395 S100A4P26447 101 aaKnown RBP4.83□□□□□ -1.64
SCN1A-201ENST00000303395 CD200P41217 278 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 TBPL1P62380 186 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 GNB2P62879 340 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 RPS21P63220 83 aaKnown RBP4.83□□□□□ -1.64
SCN1A-201ENST00000303395 GSG1Q2KHT4 349 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 CNEP1R1Q8N9A8 125 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 PHOSPHO2Q8TCD6 241 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 DTD1Q8TEA8 209 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 RELTQ969Z4 430 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 TEPSINQ96N21 525 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 MIEN1Q9BRT3 115 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 OR8D2Q9GZM6 311 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 QSER1Q2KHR3 1735 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 DDX60LQ5H9U9 1706 aaKnown RBP4.83□□□□□ -1.64
SCN1A-201ENST00000303395 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 SERTM2A0A1B0GWG4 89 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 ANTXRLA6NF34 631 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 TNFSF12O43508 249 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 DNPH1O43598 174 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 PMP2P02689 132 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 FURINP09958 794 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 SEC11BP0C7V7 166 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 PSMB2P49721 201 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 ATP1B3P54709 279 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 LTBQ06643 244 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 EXOSC2Q13868 293 aaKnown RBP4.83□□□□□ -1.64
SCN1A-201ENST00000303395 TMEM30BQ3MIR4 351 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 HTR3DQ70Z44 454 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 LYG2Q86SG7 212 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 ACVR1CQ8NER5 493 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 OR5M8Q8NGP6 311 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 ABHD4Q8TB40 342 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 RNF2Q99496 336 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 C11orf68Q9H3H3 251 aaKnown RBP4.83□□□□□ -1.64
SCN1A-201ENST00000303395 VDAC3Q9Y277 283 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 PPIL1Q9Y3C6 166 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 DMRT1Q9Y5R6 373 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 PIAS3Q9Y6X2 628 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 NCKAP5O14513 1909 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 HMX2A2RU54 273 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 MYBPHLA2RUH7 354 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 MEIS3P1A6NDR6 274 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 ANHXE9PGG2 379 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 FXYD4P59646 89 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 YPEL5P62699 121 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 OR5I1Q13606 314 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 ZNF74Q16587 644 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 ALKAL1Q6UXT8 129 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 Q7L0L9 218 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 CPOQ8IVL8 374 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 BVESQ8NE79 360 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 ST8SIA1Q92185 356 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 CDS1Q92903 461 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 SHISA4Q96DD7 197 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 OPALINQ96PE5 141 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 DDX31Q9H8H2 851 aaKnown RBP4.82□□□□□ -1.64
SCN1A-201ENST00000303395 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.82□□□□□ -1.64
SCN1A-201ENST00000303395 ASF1BQ9NVP2 202 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 ANKRD31Q8N7Z5 1873 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 NPIPB15A6NHN6 443 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-201ENST00000303395 ABLIM3O94929 683 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 PBX2P40425 430 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 ZNF816Q0VGE8 651 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-201ENST00000303395 PIN1Q13526 163 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-201ENST00000303395 ZNF789Q5FWF6 425 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 ZNF626Q68DY1 528 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 C11orf42Q8N5U0 333 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 OR51T1Q8NGJ9 327 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms