RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 AMDHD2Q9Y303 409 aa12.19□□□□□ -0.46
SKA3-201ENST00000298260 C9orf170A2RU37 121 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 LRRC72A6NJI9 287 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 DUXAA6NLW8 204 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 WRBO00258 174 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 VEGFDO43915 354 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 F13BP05160 661 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 CD14P08571 375 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 CAV2P51636 162 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 EBPQ15125 230 aaKnown RBP12.18□□□□□ -0.46
SKA3-201ENST00000298260 NNATQ16517 81 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 ZNF684Q5T5D7 378 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 LINC01590Q5TEZ4 76 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 ZNF425Q6IV72 752 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 RPL13AP3Q6NVV1 102 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 SLC35D2Q76EJ3 337 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 ZNF561Q8N587 486 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 SLC30A7Q8NEW0 376 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 NUDCD2Q8WVJ2 157 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 RSPH9Q9H1X1 276 aaPredicted RBP12.18□□□□□ -0.46
SKA3-201ENST00000298260 PLA2G2EQ9NZK7 142 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 UPB1Q9UBR1 384 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 SERTAD3Q9UJW9 196 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 A0A087WV62 115 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 C7orf77A4D0Y5 90 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 NDUFB2O95178 105 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 FOLR2P14207 255 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 PSMB6P28072 239 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 GABRA3P34903 492 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 P2RY4P51582 365 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 TRA2BP62995 288 aaKnown RBP12.18□□□□□ -0.46
SKA3-201ENST00000298260 EIPR1Q53HC9 387 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 TPGS2Q68CL5 300 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 RPL7L1Q6DKI1 246 aaKnown RBP12.18□□□□□ -0.46
SKA3-201ENST00000298260 CLEC9AQ6UXN8 241 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 FAM220AQ7Z4H9 259 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 ZNF619Q8N2I2 560 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 C15orf54Q8N8G6 183 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 OR2L5Q8NG80 312 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 OR51A2Q8NGJ7 313 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 OR6N2Q8NGY6 317 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 ZNF563Q8TA94 476 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 SLAMF9Q96A28 289 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 PRO1933Q9H354 126 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 CACFD1Q9UGQ2 172 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 KCNK6Q9Y257 313 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 TRANK1O15050 2925 aa12.18□□□□□ -0.46
SKA3-201ENST00000298260 FANCMQ8IYD8 2048 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 A0A0B4J2E0 115 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 A0A1B0GX12 115 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 OR4C45A6NMZ5 311 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 PCCBP05166 539 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 CRHP06850 196 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 LAP3P28838 519 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 ADAM8P78325 824 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 DEFB103AP81534 67 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 DEFB134Q4QY38 66 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 GLYATL3Q5SZD4 288 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 KIRREL2Q6UWL6 708 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 LYG2Q86SG7 212 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 LRRC25Q8N386 305 aaPredicted RBP12.17□□□□□ -0.46
SKA3-201ENST00000298260 OR2G2Q8NGZ5 317 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 TCTEX1D2Q8WW35 142 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 ZNF764Q96H86 408 aaPredicted RBP12.17□□□□□ -0.46
SKA3-201ENST00000298260 C14orf144Q96I85 54 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 TGM7Q96PF1 710 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 SYT4Q9H2B2 425 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 OR1A2Q9Y585 309 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 URADA6NGE7 173 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 SRPX2O60687 465 aaPredicted RBP12.17□□□□□ -0.46
SKA3-201ENST00000298260 ZNF888P0CJ79 500 aaPredicted RBP12.17□□□□□ -0.46
SKA3-201ENST00000298260 RAB5AP20339 215 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 CCR2P41597 374 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 PHYHIPQ92561 330 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 FAM46BQ96A09 425 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 SGK3Q96BR1 496 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 CMKLR1Q99788 373 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 EGLN1Q9GZT9 426 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 RAB33BQ9H082 229 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 ENTPD2Q9Y5L3 495 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 WNT6Q9Y6F9 365 aa12.17□□□□□ -0.46
SKA3-201ENST00000298260 METTL12A8MUP2 240 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 F8VVB4 439 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 F8VWA3 439 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 RAB6AP20340 208 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 GGTLC2Q14390 218 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 SLC9A3R2Q15599 337 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 RAB11BQ15907 218 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 NPAS4Q8IUM7 802 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 SFTPA1Q8IWL2 248 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 FRMD1Q8N878 549 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 CCDC54Q8NEL0 328 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 ZNF775Q96BV0 537 aaPredicted RBP12.16□□□□□ -0.46
SKA3-201ENST00000298260 KIRREL1Q96J84 757 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 JSRP1Q96MG2 331 aaPredicted RBP12.16□□□□□ -0.46
SKA3-201ENST00000298260 SLC25A21Q9BQT8 299 aaPredicted RBP12.16□□□□□ -0.46
SKA3-201ENST00000298260 SMIM3Q9BZL3 60 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 EPHX3Q9H6B9 360 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 MRPS18BQ9Y676 258 aaKnown RBP12.16□□□□□ -0.46
SKA3-201ENST00000298260 TRBV5-5A0A0J9YX44 114 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms