RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 SUCNR1Q9BXA5 334 aa10.84□□□□□ -0.67
CD44-203ENST00000278386 TMPRSS13Q9BYE2 586 aa10.84□□□□□ -0.67
CD44-203ENST00000278386 WNT5BQ9H1J7 359 aa10.84□□□□□ -0.67
CD44-203ENST00000278386 ELOVL3Q9HB03 270 aa10.84□□□□□ -0.67
CD44-203ENST00000278386 CYSLTR2Q9NS75 346 aa10.84□□□□□ -0.67
CD44-203ENST00000278386 GID8Q9NWU2 228 aa10.84□□□□□ -0.67
CD44-203ENST00000278386 CGGBP1Q9UFW8 167 aaPredicted RBP10.84□□□□□ -0.67
CD44-203ENST00000278386 ELOVL7A1L3X0 281 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 A6NIZ1 184 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 H3BSA7 217 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 H7C1C5 153 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 J3QLI3 93 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 SASH3O75995 380 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 ABHD16AO95870 558 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 NPPAP01160 153 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 AVPP01185 164 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 MSR1P21757 451 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 KDELR2P33947 212 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 MMP15P51511 669 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 RAP1BP61224 184 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 LCN6P62502 163 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 RAP1AP62834 184 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 LCN2P80188 198 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 FAM27BQ5VT28 67 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 ARL9Q6T311 187 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 C1orf229Q6ZS94 237 aaPredicted RBP10.83□□□□□ -0.68
CD44-203ENST00000278386 NRMQ8IXM6 262 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 C1orf174Q8IYL3 243 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 OR13C2Q8NGS9 318 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 OR51A7Q8NH64 312 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 GCDHQ92947 438 aaPredicted RBP10.83□□□□□ -0.68
CD44-203ENST00000278386 SLC6A7Q99884 636 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 FNDC11Q9BVV2 318 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 RBM4Q9BWF3 364 aaKnown RBP10.83□□□□□ -0.68
CD44-203ENST00000278386 VIPAS39Q9H9C1 493 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 MSL2Q9HCI7 577 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 FGFR1OP2Q9NVK5 253 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 RHCGQ9UBD6 479 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 NDRG4Q9ULP0 352 aaKnown RBP10.83□□□□□ -0.68
CD44-203ENST00000278386 A4GNTQ9UNA3 340 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 TIMM10BQ9Y5J6 103 aa10.83□□□□□ -0.68
CD44-203ENST00000278386 LOC100653049A0A140TA62 436 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 C12orf71A8MTZ7 269 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 EFCAB9A8MZ26 197 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 J3KTA2 159 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 DOK2O60496 412 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 KRT34O76011 436 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 ZNF682O95780 498 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 NGFP01138 241 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 IFNW1P05000 195 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 GSTM3P21266 225 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 RPL4P36578 427 aaKnown RBP10.82□□□□□ -0.68
CD44-203ENST00000278386 LIPAP38571 399 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 GPR4P46093 362 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 HTR5AP47898 357 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 TNFAIP6P98066 277 aaPredicted RBP10.82□□□□□ -0.68
CD44-203ENST00000278386 TRAM2Q15035 370 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 MTX3Q5HYI7 312 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 USP43Q70EL4 1123 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 VTCN1Q7Z7D3 282 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 OAFQ86UD1 273 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 TREML1Q86YW5 311 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 OFCC1Q8IZS5 231 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 NANPQ8TBE9 248 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 C4orf45Q96LM5 186 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 DIRC2Q96SL1 478 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 PLA2G12AQ9BZM1 189 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 SAR1AQ9NR31 198 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 ZDHHC8Q9ULC8 765 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 CAPN7Q9Y6W3 813 aa10.82□□□□□ -0.68
CD44-203ENST00000278386 HTR3EA5X5Y0 456 aa10.81□□□□□ -0.68
CD44-203ENST00000278386 XKRYO14609 159 aa10.81□□□□□ -0.68
CD44-203ENST00000278386 UBOX5O94941 541 aa10.81□□□□□ -0.68
CD44-203ENST00000278386 TNFSF4P23510 183 aa10.81□□□□□ -0.68
CD44-203ENST00000278386 GATA3P23771 443 aa10.81□□□□□ -0.68
CD44-203ENST00000278386 SLC9A3P48764 834 aa10.81□□□□□ -0.68
CD44-203ENST00000278386 SELENOWP63302 87 aa10.81□□□□□ -0.68
CD44-203ENST00000278386 HNRNPA0Q13151 305 aaKnown RBP10.81□□□□□ -0.68
CD44-203ENST00000278386 ENDOGQ14249 297 aaKnown RBP10.81□□□□□ -0.68
CD44-203ENST00000278386 ZNF730Q6ZMV8 503 aa10.81□□□□□ -0.68
CD44-203ENST00000278386 FOXL2NBQ6ZUU3 175 aa10.81□□□□□ -0.68
CD44-203ENST00000278386 ZER1Q7Z7L7 766 aa10.81□□□□□ -0.68
CD44-203ENST00000278386 POU5F2Q8N7G0 328 aa10.81□□□□□ -0.68
CD44-203ENST00000278386 C3orf56Q8N813 242 aa10.81□□□□□ -0.68
CD44-203ENST00000278386 NPEPL1Q8NDH3 523 aa10.81□□□□□ -0.68
CD44-203ENST00000278386 FAM216AQ8WUB2 273 aa10.81□□□□□ -0.68
CD44-203ENST00000278386 RCN3Q96D15 328 aa10.81□□□□□ -0.68
CD44-203ENST00000278386 ZMYND19Q96E35 227 aaPredicted RBP10.81□□□□□ -0.68
CD44-203ENST00000278386 ZNF570Q96NI8 536 aa10.81□□□□□ -0.68
CD44-203ENST00000278386 DCLRE1CQ96SD1 692 aaKnown RBP10.81□□□□□ -0.68
CD44-203ENST00000278386 NDEL1Q9GZM8 345 aa10.81□□□□□ -0.68
CD44-203ENST00000278386 C7orf69Q9H7B7 122 aa10.81□□□□□ -0.68
CD44-203ENST00000278386 EMC7Q9NPA0 242 aa10.81□□□□□ -0.68
CD44-203ENST00000278386 POLE4Q9NR33 117 aa10.81□□□□□ -0.68
CD44-203ENST00000278386 GRHPRQ9UBQ7 328 aa10.81□□□□□ -0.68
CD44-203ENST00000278386 ADAM18Q9Y3Q7 739 aa10.81□□□□□ -0.68
CD44-203ENST00000278386 NPTNQ9Y639 398 aa10.81□□□□□ -0.68
CD44-203ENST00000278386 GSTA4O15217 222 aa10.8□□□□□ -0.68
CD44-203ENST00000278386 ICMTO60725 284 aa10.8□□□□□ -0.68
CD44-203ENST00000278386 PRSS23O95084 383 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms