RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 AP3S2P59780 193 aa14.92□□□□□ -0.02
VPS54-201ENST00000272322 PUDPQ08623 228 aa14.92□□□□□ -0.02
VPS54-201ENST00000272322 MFAP5Q13361 173 aa14.92□□□□□ -0.02
VPS54-201ENST00000272322 COQ8AQ8NI60 647 aa14.92□□□□□ -0.02
VPS54-201ENST00000272322 MNTQ99583 582 aa14.92□□□□□ -0.02
VPS54-201ENST00000272322 PELOQ9BRX2 385 aaKnown RBP14.92□□□□□ -0.02
VPS54-201ENST00000272322 TMEM14AQ9Y6G1 99 aa14.92□□□□□ -0.02
VPS54-201ENST00000272322 TTC28Q96AY4 2481 aa14.92□□□□□ -0.02
VPS54-201ENST00000272322 GGT3PA6NGU5 568 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 PLPP3O14495 311 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 CCSO14618 274 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 CREBL2O60519 120 aaPredicted RBP14.91□□□□□ -0.02
VPS54-201ENST00000272322 OR2J2O76002 312 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 GPR139Q6DWJ6 353 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 BOLLQ8N9W6 283 aaKnown RBP14.91□□□□□ -0.02
VPS54-201ENST00000272322 OR10G3Q8NGC4 313 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 SEC22AQ96IW7 307 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 UBE2ZQ9H832 354 aaPredicted RBP14.91□□□□□ -0.02
VPS54-201ENST00000272322 COPZ2Q9P299 210 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 MEIKINA0A087WXM9 373 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 GLSO94925 669 aaPredicted RBP14.91□□□□□ -0.02
VPS54-201ENST00000272322 ZNF35P13682 527 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 GLULP15104 373 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 PRSS3P35030 304 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 DYRK1AQ13627 763 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 SGCBQ16585 318 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 DCAF12L2Q5VW00 463 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 ZNF574Q6ZN55 896 aaPredicted RBP14.91□□□□□ -0.02
VPS54-201ENST00000272322 GVQW1Q8N7I0 195 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 OR5D18Q8NGL1 313 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 ZNF285Q96NJ3 590 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 MMACHCQ9Y4U1 282 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 LRP4O75096 1905 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 KCNAB3O43448 404 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 P2RX3P56373 397 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 TOMM20Q15388 145 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 LPAL2Q16609 132 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 TMEM225Q6GV28 225 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 OR52W1Q6IF63 320 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 KCTD20Q7Z5Y7 419 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 ZNF501Q96CX3 271 aaPredicted RBP14.91□□□□□ -0.02
VPS54-201ENST00000272322 TXNIPQ9H3M7 391 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 ZCCHC4Q9H5U6 513 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 PTGES2Q9H7Z7 377 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 METTL7AQ9H8H3 244 aa14.91□□□□□ -0.02
VPS54-201ENST00000272322 CNOT1A5YKK6 2376 aaKnown RBP14.91□□□□□ -0.02
VPS54-201ENST00000272322 LOC107986453A0A1B0GWG9 222 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 ANKRD20A5PA0PJZ0 165 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 RAMP1O60894 148 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 IGLV3-19P01714 112 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 CD2P06729 351 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 SLC6A8P48029 635 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 NKAIN1Q4KMZ8 207 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 NUP54Q7Z3B4 507 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 CDH24Q86UP0 819 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 OR13C9Q8NGT0 318 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 ASB5Q8WWX0 329 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 CKLFQ9UBR5 152 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 TMEM272A0A1B0GTI8 110 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 LEUTXA8MZ59 168 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 L7N2F9 121 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 SCRG1O75711 98 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 F10P00742 488 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 AMY2AP04746 511 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 KCTD18Q6PI47 426 aaPredicted RBP14.9□□□□□ -0.02
VPS54-201ENST00000272322 GRINAQ7Z429 371 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 SLC26A10Q8NG04 563 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 OR5B2Q96R09 309 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 AKAP7Q9P0M2 348 aaPredicted RBP14.9□□□□□ -0.02
VPS54-201ENST00000272322 EPHA6Q9UF33 1036 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 FBXL2Q9UKC9 423 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 SIGLEC5O15389 551 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 ZNF254O75437 659 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 H2BFMP0C1H6 154 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 ANOS1P23352 680 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 SIGLEC14Q08ET2 396 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 RASGEF1BQ0VAM2 473 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 MUC20Q8N307 709 aaPredicted RBP14.9□□□□□ -0.02
VPS54-201ENST00000272322 GALNT16Q8N428 558 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 SFXN2Q96NB2 322 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 KLHL13Q9P2N7 655 aa14.9□□□□□ -0.02
VPS54-201ENST00000272322 ZNF230Q9UIE0 474 aaPredicted RBP14.9□□□□□ -0.02
VPS54-201ENST00000272322 CACNA1GO43497 2377 aa14.89□□□□□ -0.03
VPS54-201ENST00000272322 IGHV3-15A0A0B4J1V0 119 aa14.89□□□□□ -0.03
VPS54-201ENST00000272322 CFIP05156 583 aa14.89□□□□□ -0.03
VPS54-201ENST00000272322 RAB40ALP0C0E4 278 aa14.89□□□□□ -0.03
VPS54-201ENST00000272322 AFF3P51826 1226 aaKnown RBP14.89□□□□□ -0.03
VPS54-201ENST00000272322 ZNF767PQ75MW2 155 aa14.89□□□□□ -0.03
VPS54-201ENST00000272322 FAM109AQ8N4B1 249 aa14.89□□□□□ -0.03
VPS54-201ENST00000272322 STK35Q8TDR2 534 aa14.89□□□□□ -0.03
VPS54-201ENST00000272322 RAB40AQ8WXH6 277 aa14.89□□□□□ -0.03
VPS54-201ENST00000272322 SLC41A2Q96JW4 573 aa14.89□□□□□ -0.03
VPS54-201ENST00000272322 ARL6Q9H0F7 186 aa14.89□□□□□ -0.03
VPS54-201ENST00000272322 SCP2D1Q9UJQ7 156 aa14.89□□□□□ -0.03
VPS54-201ENST00000272322 TRBV5-5A0A0J9YX44 114 aa14.89□□□□□ -0.03
VPS54-201ENST00000272322 ICMTO60725 284 aa14.89□□□□□ -0.03
VPS54-201ENST00000272322 ECDO95905 644 aaPredicted RBP14.89□□□□□ -0.03
VPS54-201ENST00000272322 GLB1P16278 677 aa14.89□□□□□ -0.03
VPS54-201ENST00000272322 HTR2CP28335 458 aa14.89□□□□□ -0.03
VPS54-201ENST00000272322 CAPZA2P47755 286 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms