RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 ZNF583Q96ND8 569 aa14.97□□□□□ -0.01
SHKBP1-223ENST00000600552 TXNIPQ9H3M7 391 aa14.97□□□□□ -0.01
SHKBP1-223ENST00000600552 STX18Q9P2W9 335 aaKnown RBP14.97□□□□□ -0.01
SHKBP1-223ENST00000600552 WIPI2Q9Y4P8 454 aa14.97□□□□□ -0.01
SHKBP1-223ENST00000600552 ANK2Q01484 3957 aa14.97□□□□□ -0.01
SHKBP1-223ENST00000600552 ARHGAP32A7KAX9 2087 aa14.97□□□□□ -0.01
SHKBP1-223ENST00000600552 LOC100509620A0A075B734 347 aa14.96□□□□□ -0.01
SHKBP1-223ENST00000600552 MGRN1O60291 552 aa14.96□□□□□ -0.01
SHKBP1-223ENST00000600552 AVPP01185 164 aa14.96□□□□□ -0.01
SHKBP1-223ENST00000600552 IGHV1-46P01743 117 aa14.96□□□□□ -0.01
SHKBP1-223ENST00000600552 IGHV3-13P01766 116 aa14.96□□□□□ -0.01
SHKBP1-223ENST00000600552 ARFIP2P53365 341 aa14.96□□□□□ -0.01
SHKBP1-223ENST00000600552 SCGB2A2Q13296 93 aa14.96□□□□□ -0.01
SHKBP1-223ENST00000600552 NRN1LQ496H8 165 aa14.96□□□□□ -0.01
SHKBP1-223ENST00000600552 ERICH5Q6P6B1 374 aa14.96□□□□□ -0.01
SHKBP1-223ENST00000600552 SLC25A47Q6Q0C1 308 aa14.96□□□□□ -0.01
SHKBP1-223ENST00000600552 OR8J3Q8NGG0 315 aa14.96□□□□□ -0.01
SHKBP1-223ENST00000600552 NABP1Q96AH0 204 aa14.96□□□□□ -0.01
SHKBP1-223ENST00000600552 RAB39BQ96DA2 213 aa14.96□□□□□ -0.01
SHKBP1-223ENST00000600552 BPIFA2Q96DR5 249 aa14.96□□□□□ -0.01
SHKBP1-223ENST00000600552 ELMOD3Q96FG2 381 aa14.96□□□□□ -0.01
SHKBP1-223ENST00000600552 POM121L2Q96KW2 1035 aa14.96□□□□□ -0.01
SHKBP1-223ENST00000600552 GAL3ST1Q99999 423 aa14.96□□□□□ -0.01
SHKBP1-223ENST00000600552 SIKE1Q9BRV8 207 aa14.96□□□□□ -0.01
SHKBP1-223ENST00000600552 OR2J1Q9GZK6 312 aa14.96□□□□□ -0.01
SHKBP1-223ENST00000600552 PCDHB10Q9UN67 800 aa14.96□□□□□ -0.01
SHKBP1-223ENST00000600552 TRAV27A0A087WT01 109 aa14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 CENPBD1B2RD01 187 aa14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 H7C1C5 153 aa14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 FXYD1O00168 92 aa14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 TROVE2P10155 538 aaKnown RBP eCLIP14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 EPHA1P21709 976 aa14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 FUT4P22083 530 aa14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 IFNA8P32881 189 aa14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 KDELR2P33947 212 aa14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 RBMXP38159 391 aaKnown RBP14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 RPL27P61353 136 aaKnown RBP14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 PPP1CBP62140 327 aa14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 LCN6P62502 163 aa14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 ST3GAL3Q11203 375 aa14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 TAF11Q15544 211 aa14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 ZNF774Q6NX45 483 aa14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 C1orf229Q6ZS94 237 aaPredicted RBP14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 RFPL4BQ6ZWI9 263 aa14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 ALDH16A1Q8IZ83 802 aa14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 DCLRE1CQ96SD1 692 aaKnown RBP14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 SEPHS2Q99611 448 aa14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 FNDC11Q9BVV2 318 aa14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 OR2H1Q9GZK4 316 aa14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 POLR2J2Q9GZM3 115 aaKnown RBP14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 POLR2J3Q9H1A7 115 aaKnown RBP14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 WNT5BQ9H1J7 359 aa14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 GID8Q9NWU2 228 aa14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 NKIRAS2Q9NYR9 191 aa14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 GMPR2Q9P2T1 348 aaKnown RBP14.95□□□□□ -0.02
SHKBP1-223ENST00000600552 A0A0G2JMP0 313 aa14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 A0A0X1KG70 313 aa14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 ZSCAN5BA6NJL1 495 aa14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 NGFP01138 241 aa14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 NR2C1P13056 603 aa14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 ZNF133P52736 654 aaPredicted RBP14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 LCN2P80188 198 aa14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 MAPRE2Q15555 327 aa14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 TMEM255AQ5JRV8 349 aa14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 DCAF12L2Q5VW00 463 aa14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 UNQ6126/PRO20091Q6UXV3 157 aa14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 NRMQ8IXM6 262 aa14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 PCYOX1LQ8NBM8 494 aa14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 OR2T12Q8NG77 320 aa14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 OR4M2Q8NGB6 313 aa14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 KLF14Q8TD94 323 aaPredicted RBP14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 GEMIN6Q8WXD5 167 aaKnown RBP14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 GCDHQ92947 438 aaPredicted RBP14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 NMD3Q96D46 503 aaKnown RBP14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 MARS2Q96GW9 593 aaKnown RBP14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 ALG12Q9BV10 488 aa14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 EGLN1Q9GZT9 426 aa14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 MSL2Q9HCI7 577 aa14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 EMC7Q9NPA0 242 aa14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 FGFR1OP2Q9NVK5 253 aa14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 TIMM10BQ9Y5J6 103 aa14.94□□□□□ -0.02
SHKBP1-223ENST00000600552 A0A0A6YYJ9 748 aa14.93□□□□□ -0.02
SHKBP1-223ENST00000600552 EFCAB9A8MZ26 197 aa14.93□□□□□ -0.02
SHKBP1-223ENST00000600552 FAM220BPB1ANY3 271 aa14.93□□□□□ -0.02
SHKBP1-223ENST00000600552 J3KTA2 159 aa14.93□□□□□ -0.02
SHKBP1-223ENST00000600552 TIMM8AO60220 97 aaPredicted RBP14.93□□□□□ -0.02
SHKBP1-223ENST00000600552 ZNF682O95780 498 aa14.93□□□□□ -0.02
SHKBP1-223ENST00000600552 IGHV2-5P01817 119 aa14.93□□□□□ -0.02
SHKBP1-223ENST00000600552 THRBP10828 461 aa14.93□□□□□ -0.02
SHKBP1-223ENST00000600552 CFPP27918 469 aa14.93□□□□□ -0.02
SHKBP1-223ENST00000600552 RPL4P36578 427 aaKnown RBP14.93□□□□□ -0.02
SHKBP1-223ENST00000600552 ARHGDIAP52565 204 aa14.93□□□□□ -0.02
SHKBP1-223ENST00000600552 SPRNQ5BIV9 151 aa14.93□□□□□ -0.02
SHKBP1-223ENST00000600552 FAM27BQ5VT28 67 aa14.93□□□□□ -0.02
SHKBP1-223ENST00000600552 VTCN1Q7Z7D3 282 aa14.93□□□□□ -0.02
SHKBP1-223ENST00000600552 PEG10Q86TG7 708 aaKnown RBP14.93□□□□□ -0.02
SHKBP1-223ENST00000600552 POU5F2Q8N7G0 328 aa14.93□□□□□ -0.02
SHKBP1-223ENST00000600552 SEMA6DQ8NFY4 1073 aa14.93□□□□□ -0.02
SHKBP1-223ENST00000600552 C22orf15Q8WYQ4 148 aa14.93□□□□□ -0.02
SHKBP1-223ENST00000600552 LZICQ8WZA0 190 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms