RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 SYT4Q9H2B2 425 aa13.92□□□□□ -0.18
TRIM28-213ENST00000598355 POMPQ9Y244 141 aa13.92□□□□□ -0.18
TRIM28-213ENST00000598355 IER3IP1Q9Y5U9 82 aa13.92□□□□□ -0.18
TRIM28-213ENST00000598355 ABCA1O95477 2261 aa13.91□□□□□ -0.18
TRIM28-213ENST00000598355 DHRS12A0PJE2 317 aa13.91□□□□□ -0.18
TRIM28-213ENST00000598355 ARRDC5A6NEK1 342 aa13.91□□□□□ -0.18
TRIM28-213ENST00000598355 TRIM64A6NGJ6 449 aa13.91□□□□□ -0.18
TRIM28-213ENST00000598355 TRIM64BA6NI03 449 aa13.91□□□□□ -0.18
TRIM28-213ENST00000598355 GPRIN2O60269 458 aa13.91□□□□□ -0.18
TRIM28-213ENST00000598355 ICMTO60725 284 aa13.91□□□□□ -0.18
TRIM28-213ENST00000598355 PPP1R3DO95685 299 aa13.91□□□□□ -0.18
TRIM28-213ENST00000598355 PTHP01270 115 aa13.91□□□□□ -0.18
TRIM28-213ENST00000598355 IGFBP1P08833 259 aaPredicted RBP13.91□□□□□ -0.18
TRIM28-213ENST00000598355 LAP3P28838 519 aa13.91□□□□□ -0.18
TRIM28-213ENST00000598355 CDKN2AP42771 156 aaKnown RBP13.91□□□□□ -0.18
TRIM28-213ENST00000598355 SNRPD2P62316 118 aaKnown RBP13.91□□□□□ -0.18
TRIM28-213ENST00000598355 CLEC12BQ2HXU8 276 aa13.91□□□□□ -0.18
TRIM28-213ENST00000598355 PABPC1L2AQ5JQF8 200 aa13.91□□□□□ -0.18
TRIM28-213ENST00000598355 KRT80Q6KB66 452 aa13.91□□□□□ -0.18
TRIM28-213ENST00000598355 RPL13AP3Q6NVV1 102 aa13.91□□□□□ -0.18
TRIM28-213ENST00000598355 SYT9Q86SS6 491 aa13.91□□□□□ -0.18
TRIM28-213ENST00000598355 LRRC18Q8N456 261 aa13.91□□□□□ -0.18
TRIM28-213ENST00000598355 PAQR4Q8N4S7 273 aaPredicted RBP13.91□□□□□ -0.18
TRIM28-213ENST00000598355 CPEB3Q8NE35 698 aaKnown RBP13.91□□□□□ -0.18
TRIM28-213ENST00000598355 MRPL24Q96A35 216 aaKnown RBP13.91□□□□□ -0.18
TRIM28-213ENST00000598355 DOK1Q99704 481 aa13.91□□□□□ -0.18
TRIM28-213ENST00000598355 DGCR6LQ9BY27 220 aa13.91□□□□□ -0.18
TRIM28-213ENST00000598355 REEP1Q9H902 201 aa13.91□□□□□ -0.18
TRIM28-213ENST00000598355 IL20Q9NYY1 176 aa13.91□□□□□ -0.18
TRIM28-213ENST00000598355 FBXO9Q9UK97 447 aaPredicted RBP13.91□□□□□ -0.18
TRIM28-213ENST00000598355 SAMHD1Q9Y3Z3 626 aaKnown RBP13.91□□□□□ -0.18
TRIM28-213ENST00000598355 CDH10Q9Y6N8 788 aa13.91□□□□□ -0.18
TRIM28-213ENST00000598355 SETD2Q9BYW2 2564 aaPredicted RBP13.91□□□□□ -0.18
TRIM28-213ENST00000598355 ZFHX3Q15911 3703 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 A0A096LNT2 108 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 H7C1Q1 480 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 BHLHE40O14503 412 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 SOCS2O14508 198 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 GSC2O15499 205 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 IDH3BO43837 385 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 CCNB2O95067 398 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 STAMBPO95630 424 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 SCG5P05408 212 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 INHBBP09529 407 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 BMP4P12644 408 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 PCSK6P29122 969 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 EVX1P49640 407 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 RPS23P62266 143 aaKnown RBP13.9□□□□□ -0.18
TRIM28-213ENST00000598355 PSG4Q00888 419 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 FLOT2Q14254 428 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 SGCAQ16586 387 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 MICAQ29983 383 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 VHLLQ6RSH7 139 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 RASSF6Q6ZTQ3 369 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 PAPD5Q8NDF8 572 aaKnown RBP13.9□□□□□ -0.18
TRIM28-213ENST00000598355 POM121L2Q96KW2 1035 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 SAMD8Q96LT4 415 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 ERMAPQ96PL5 475 aaPredicted RBP13.9□□□□□ -0.18
TRIM28-213ENST00000598355 SORCS2Q96PQ0 1159 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 ZNF416Q9BWM5 594 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 CHID1Q9BWS9 393 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 OR2H1Q9GZK4 316 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 WNT5BQ9H1J7 359 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 SPEF1Q9Y4P9 236 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 PMF1-BGLAPU3KQ54 211 aa13.9□□□□□ -0.18
TRIM28-213ENST00000598355 IGLV1-36A0A0B4J1U3 117 aa13.89□□□□□ -0.19
TRIM28-213ENST00000598355 A0A1W2PPL8 197 aa13.89□□□□□ -0.19
TRIM28-213ENST00000598355 DCTN6O00399 190 aa13.89□□□□□ -0.19
TRIM28-213ENST00000598355 GASTP01350 101 aa13.89□□□□□ -0.19
TRIM28-213ENST00000598355 TP53P04637 393 aaPredicted RBP13.89□□□□□ -0.19
TRIM28-213ENST00000598355 GAAP10253 952 aa13.89□□□□□ -0.19
TRIM28-213ENST00000598355 EFNA4P52798 201 aa13.89□□□□□ -0.19
TRIM28-213ENST00000598355 PLP2Q04941 152 aa13.89□□□□□ -0.19
TRIM28-213ENST00000598355 PPP1R8Q12972 351 aaKnown RBP13.89□□□□□ -0.19
TRIM28-213ENST00000598355 TNK1Q13470 666 aa13.89□□□□□ -0.19
TRIM28-213ENST00000598355 KCNMB1Q16558 191 aa13.89□□□□□ -0.19
TRIM28-213ENST00000598355 TBC1D28Q2M2D7 210 aa13.89□□□□□ -0.19
TRIM28-213ENST00000598355 CD300LDQ6UXZ3 194 aa13.89□□□□□ -0.19
TRIM28-213ENST00000598355 BIVMQ86UB2 503 aa13.89□□□□□ -0.19
TRIM28-213ENST00000598355 AQP11Q8NBQ7 271 aa13.89□□□□□ -0.19
TRIM28-213ENST00000598355 OR10H5Q8NGA6 315 aa13.89□□□□□ -0.19
TRIM28-213ENST00000598355 OR8D4Q8NGM9 314 aa13.89□□□□□ -0.19
TRIM28-213ENST00000598355 MRPL37Q9BZE1 423 aaKnown RBP13.89□□□□□ -0.19
TRIM28-213ENST00000598355 PLA2G12AQ9BZM1 189 aa13.89□□□□□ -0.19
TRIM28-213ENST00000598355 NUAK2Q9H093 628 aa13.89□□□□□ -0.19
TRIM28-213ENST00000598355 RACGAP1Q9H0H5 632 aa13.89□□□□□ -0.19
TRIM28-213ENST00000598355 KCNN2Q9H2S1 579 aa13.89□□□□□ -0.19
TRIM28-213ENST00000598355 EGLN3Q9H6Z9 239 aa13.89□□□□□ -0.19
TRIM28-213ENST00000598355 RNF121Q9H920 327 aa13.89□□□□□ -0.19
TRIM28-213ENST00000598355 CCNB1IP1Q9NPC3 277 aa13.89□□□□□ -0.19
TRIM28-213ENST00000598355 CMAHPQ9Y471 501 aa13.89□□□□□ -0.19
TRIM28-213ENST00000598355 NF1P21359 2839 aa13.88□□□□□ -0.19
TRIM28-213ENST00000598355 LOC100509620A0A075B734 347 aa13.88□□□□□ -0.19
TRIM28-213ENST00000598355 IQCMA0A1B0GVH7 501 aa13.88□□□□□ -0.19
TRIM28-213ENST00000598355 SLC16A7O60669 478 aa13.88□□□□□ -0.19
TRIM28-213ENST00000598355 KHDRBS3O75525 346 aaKnown RBP13.88□□□□□ -0.19
TRIM28-213ENST00000598355 ATP5HO75947 161 aa13.88□□□□□ -0.19
TRIM28-213ENST00000598355 CST1P01037 141 aa13.88□□□□□ -0.19
TRIM28-213ENST00000598355 COX5BP10606 129 aa13.88□□□□□ -0.19
TRIM28-213ENST00000598355 HIST1H1CP16403 213 aaKnown RBP13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms