RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	CTXN1	P60606	82 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	DHODH	Q02127	395 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	TUSC1	Q2TAM9	212 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	C5orf46	Q6UWT4	87 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	MDGA2	Q7Z553	956 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	DTX1	Q86Y01	620 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	ARL5B	Q96KC2	179 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	MRGPRX4	Q96LA9	322 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318		Q96M85	177 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	USB1	Q9BQ65	265 aa	Known RBP	13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	JAM3	Q9BX67	310 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	NMNAT2	Q9BZQ4	307 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	OR51V1	Q9H2C8	321 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	HPF1	Q9NWY4	346 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	EXOSC1	Q9Y3B2	195 aa	Known RBP	13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	CUL9	Q8IWT3	2517 aa		13.84	□□□□□ -0.19
DDX39A-209	ENST00000589318	TEX13C	A0A0J9YWL9	993 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318		A0A1B0GW55	424 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	OR6C68	A6NDL8	312 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	SLC22A31	A6NKX4	558 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	GYPB	P06028	91 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	DUX4L2	P0CJ85	424 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	DUX4L3	P0CJ86	424 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	DUX4L4	P0CJ87	422 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	DUX4L5	P0CJ88	424 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	DUX4L6	P0CJ89	424 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	DUX4L7	P0CJ90	424 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	RBMS1	P29558	406 aa	Known RBP	13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	CD79B	P40259	229 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	FOXK1	P85037	733 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	SGCB	Q16585	318 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	SLC22A10	Q63ZE4	541 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	MAMDC2	Q7Z304	686 aa	Predicted RBP	13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	LRRC28	Q86X40	367 aa	Predicted RBP	13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	FAM98A	Q8NCA5	519 aa	Known RBP	13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	OR51G2	Q8NGK0	314 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	OR5J2	Q8NH18	312 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	NMNAT3	Q96T66	252 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	ABCG5	Q9H222	651 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	DLL4	Q9NR61	685 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	DUX4	Q9UBX2	424 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	COPS3	Q9UNS2	423 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	SLC6A5	Q9Y345	797 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	GVINP1	Q7Z2Y8	2422 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	ALPK2	Q86TB3	2170 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	MED13	Q9UHV7	2174 aa		13.83	□□□□□ -0.2
DDX39A-209	ENST00000589318	PRSS44	E7EML9	344 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	ZNF208	O43345	1280 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	DXO	O77932	396 aa	Known RBP	13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	AHSA1	O95433	338 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	HLA-DPB1	P04440	258 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	HIST1H2AB	P04908	130 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	PAICS	P22234	425 aa	Known RBP	13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	AHCY	P23526	432 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	GRPR	P30550	384 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	CALCR	P30988	508 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	SDHA	P31040	664 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	CDKN2A	P42771	156 aa	Known RBP	13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	ACER2	Q5QJU3	275 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	OR2G6	Q5TZ20	316 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	SLC6A19	Q695T7	634 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	RGS7BP	Q6MZT1	257 aa	Predicted RBP	13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	C3P1	Q6ZMU1	363 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	HIST3H2A	Q7L7L0	130 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	ZNF227	Q86WZ6	799 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	OR6S1	Q8NH40	331 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	ZNRF4	Q8WWF5	429 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	HIST1H2AC	Q93077	130 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	RELT	Q969Z4	430 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	SLC25A36	Q96CQ1	311 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	TSPAN32	Q96QS1	320 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	THAP7	Q9BT49	309 aa	Predicted RBP	13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	ASCL3	Q9NQ33	180 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	HAO2	Q9NYQ3	351 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	MED12	Q93074	2177 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	MPTX1	A8MV57	137 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	GPR171	O14626	319 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	AKAP8	O43823	692 aa	Known RBP	13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	OR2T1	O43869	369 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	LHFPL3	Q86UP9	236 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	TMEM99	Q8N816	258 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	OR4K17	Q8NGC6	315 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	SGCZ	Q96LD1	299 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	TIMP4	Q99727	224 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	ADGRL4	Q9HBW9	690 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	CYSLTR2	Q9NS75	346 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	ANKRD10	Q9NXR5	420 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	KCNK7	Q9Y2U2	307 aa		13.82	□□□□□ -0.2
DDX39A-209	ENST00000589318	NCKAP5	O14513	1909 aa		13.81	□□□□□ -0.2
DDX39A-209	ENST00000589318	SLC22A23	A1A5C7	686 aa		13.81	□□□□□ -0.2
DDX39A-209	ENST00000589318	OR6C65	A6NJZ3	312 aa		13.81	□□□□□ -0.2
DDX39A-209	ENST00000589318	SULT1B1	O43704	296 aa		13.81	□□□□□ -0.2
DDX39A-209	ENST00000589318	FZD7	O75084	574 aa		13.81	□□□□□ -0.2
DDX39A-209	ENST00000589318	B3GALNT1	O75752	331 aa		13.81	□□□□□ -0.2
DDX39A-209	ENST00000589318	FGF2	P09038	288 aa		13.81	□□□□□ -0.2
DDX39A-209	ENST00000589318	RPS25	P62851	125 aa	Known RBP	13.81	□□□□□ -0.2
DDX39A-209	ENST00000589318	ZMYND11	Q15326	602 aa		13.81	□□□□□ -0.2
DDX39A-209	ENST00000589318	MEST	Q5EB52	335 aa		13.81	□□□□□ -0.2
DDX39A-209	ENST00000589318	EXD3	Q8N9H8	876 aa		13.81	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms