RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 PRRG2O14669 202 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 LALBAP00709 142 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 OR2T7P0C7T2 308 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 MYL12AP19105 171 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 FAPQ12884 760 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 MED22Q15528 200 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 UBE2J2Q8N2K1 259 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 ZNF485Q8NCK3 441 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 OR2T27Q8NH04 317 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 FNDC8Q8TC99 324 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 MUL1Q969V5 352 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 TTYH2Q9BSA4 534 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 JAM3Q9BX67 310 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 ERGIC3Q9Y282 383 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 TNFSF13O75888 250 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 KRT33AO76009 404 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 GLI4P10075 376 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 JUNBP17275 347 aaPredicted RBP22.1■■□□□ 1.13
SHMT1-207ENST00000580002 RPL5P46777 297 aaKnown RBP22.1■■□□□ 1.13
SHMT1-207ENST00000580002 ENTPD1P49961 510 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 NR1H2P55055 460 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 OR12D2P58182 307 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 GALEQ14376 348 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 TP53I3Q53FA7 332 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 RNLSQ5VYX0 342 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 SPATC1Q76KD6 591 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 BTLAQ7Z6A9 289 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 LRRC18Q8N456 261 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 SVOPQ8N4V2 548 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 THEM6Q8WUY1 208 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 SPRYD4Q8WW59 207 aaPredicted RBP22.1■■□□□ 1.13
SHMT1-207ENST00000580002 GP6Q9HCN6 339 aa22.1■■□□□ 1.13
SHMT1-207ENST00000580002 ALOX5APP20292 161 aa22.09■■□□□ 1.13
SHMT1-207ENST00000580002 OR3A2P47893 321 aa22.09■■□□□ 1.13
SHMT1-207ENST00000580002 PER3P56645 1201 aa22.09■■□□□ 1.13
SHMT1-207ENST00000580002 RAB39AQ14964 217 aa22.09■■□□□ 1.13
SHMT1-207ENST00000580002 PLEKHG7Q6ZR37 379 aa22.09■■□□□ 1.13
SHMT1-207ENST00000580002 FOXL2NBQ6ZUU3 175 aa22.09■■□□□ 1.13
SHMT1-207ENST00000580002 OTOSQ8NHW6 89 aa22.09■■□□□ 1.13
SHMT1-207ENST00000580002 TM9SF2Q99805 663 aa22.09■■□□□ 1.13
SHMT1-207ENST00000580002 LINC00470Q9BZP3 86 aa22.09■■□□□ 1.13
SHMT1-207ENST00000580002 GLRX2Q9NS18 164 aa22.09■■□□□ 1.13
SHMT1-207ENST00000580002 ZFYVE26Q68DK2 2539 aa22.08■■□□□ 1.13
SHMT1-207ENST00000580002 LRRTM2O43300 516 aa22.08■■□□□ 1.13
SHMT1-207ENST00000580002 B4GALT1P15291 398 aa22.08■■□□□ 1.13
SHMT1-207ENST00000580002 ZNF823P16415 610 aa22.08■■□□□ 1.13
SHMT1-207ENST00000580002 PSMB9P28065 219 aa22.08■■□□□ 1.13
SHMT1-207ENST00000580002 PMPCAQ10713 525 aa22.08■■□□□ 1.13
SHMT1-207ENST00000580002 UBE2UQ5VVX9 321 aa22.08■■□□□ 1.13
SHMT1-207ENST00000580002 TFAP2EQ6VUC0 442 aa22.08■■□□□ 1.13
SHMT1-207ENST00000580002 SH3GL3Q99963 347 aa22.08■■□□□ 1.13
SHMT1-207ENST00000580002 ZNF416Q9BWM5 594 aa22.08■■□□□ 1.13
SHMT1-207ENST00000580002 YIPF3Q9GZM5 350 aa22.08■■□□□ 1.13
SHMT1-207ENST00000580002 UPB1Q9UBR1 384 aa22.08■■□□□ 1.13
SHMT1-207ENST00000580002 LHFPL6Q9Y693 200 aa22.08■■□□□ 1.13
SHMT1-207ENST00000580002 RELNP78509 3460 aa22.08■■□□□ 1.12
SHMT1-207ENST00000580002 ZNF99A8MXY4 864 aaPredicted RBP22.07■■□□□ 1.12
SHMT1-207ENST00000580002 E9PI62 339 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 MYL12BO14950 172 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 PATE4P0C8F1 98 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 HSMCR30P0CW71 290 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 ARF1P84077 181 aaKnown RBP22.07■■□□□ 1.12
SHMT1-207ENST00000580002 ENDOGQ14249 297 aaKnown RBP22.07■■□□□ 1.12
SHMT1-207ENST00000580002 RIPPLY2Q5TAB7 128 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 ZNF322Q6U7Q0 402 aaPredicted RBP22.07■■□□□ 1.12
SHMT1-207ENST00000580002 FGFBP3Q8TAT2 258 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 RORBQ92753 470 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 STARD4Q96DR4 205 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 TP63Q9H3D4 680 aaPredicted RBP22.07■■□□□ 1.12
SHMT1-207ENST00000580002 CHCHD3Q9NX63 227 aaKnown RBP22.07■■□□□ 1.12
SHMT1-207ENST00000580002 LAMP5Q9UJQ1 280 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 ARHGAP21Q5T5U3 1957 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 INTS1Q8N201 2190 aaKnown RBP22.07■■□□□ 1.12
SHMT1-207ENST00000580002 J3QLW9 94 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 HRGP04196 525 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 TMIGD3P0DMS9 266 aaPredicted RBP22.07■■□□□ 1.12
SHMT1-207ENST00000580002 ZNF19P17023 458 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 PTGER4P35408 488 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 GTF2A1P52655 376 aaPredicted RBP22.07■■□□□ 1.12
SHMT1-207ENST00000580002 BLVRAP53004 296 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 EIF2B1Q14232 305 aaKnown RBP22.07■■□□□ 1.12
SHMT1-207ENST00000580002 PCK2Q16822 640 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 ZFP41Q8N8Y5 198 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 WBP1Q96G27 269 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 C4orf36Q96KX1 117 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 FOXB1Q99853 325 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 ABHD6Q9BV23 337 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 MND1Q9BWT6 205 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 B3GAT2Q9NPZ5 323 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 TMEM38BQ9NVV0 291 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 CYB5R1Q9UHQ9 305 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 EMC9Q9Y3B6 208 aa22.07■■□□□ 1.12
SHMT1-207ENST00000580002 NCOA6Q14686 2063 aaPredicted RBP22.06■■□□□ 1.12
SHMT1-207ENST00000580002 TMEM129A0AVI4 362 aa22.06■■□□□ 1.12
SHMT1-207ENST00000580002 ZNF670-ZNF695F2Z2N8 137 aa22.06■■□□□ 1.12
SHMT1-207ENST00000580002 ZNF84P51523 738 aa22.06■■□□□ 1.12
SHMT1-207ENST00000580002 SPHARQ15513 63 aa22.06■■□□□ 1.12
SHMT1-207ENST00000580002 KCNMB1Q16558 191 aa22.06■■□□□ 1.12
SHMT1-207ENST00000580002 ZNF684Q5T5D7 378 aa22.06■■□□□ 1.12
SHMT1-207ENST00000580002 OR2A2Q6IF42 318 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms