RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 CDAP32320 146 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 GIPRP48546 466 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 ALDH3A2P51648 485 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 CHN2P52757 468 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 RAD23AP54725 363 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 NAAAQ02083 359 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 NPRL3Q12980 569 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 MICAQ29983 383 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 PGGHGQ32M88 737 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 KRT80Q6KB66 452 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 FOXL2NBQ6ZUU3 175 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 DPPA2Q7Z7J5 298 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 ADCK1Q86TW2 530 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 DEPDC4Q8N2C3 294 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 CBR4Q8N4T8 237 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 AQP11Q8NBQ7 271 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 FGFBP3Q8TAT2 258 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 SMAP2Q8WU79 429 aaPredicted RBP8.13□□□□□ -1.11
LDLR-211ENST00000560173 NSMAFQ92636 917 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 SAMD8Q96LT4 415 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 ZNF75AQ96N20 296 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 SH3GL3Q99963 347 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 DGCR6LQ9BY27 220 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 SIAEQ9HAT2 523 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 SMPD3Q9NY59 655 aaPredicted RBP8.13□□□□□ -1.11
LDLR-211ENST00000560173 USE1Q9NZ43 259 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 CISD1Q9NZ45 108 aaKnown RBP8.13□□□□□ -1.11
LDLR-211ENST00000560173 VSX1Q9NZR4 365 aaPredicted RBP8.13□□□□□ -1.11
LDLR-211ENST00000560173 ENOPH1Q9UHY7 261 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 POU2F3Q9UKI9 436 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 MOKQ9UQ07 419 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 IER3IP1Q9Y5U9 82 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 ATP23Q9Y6H3 246 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 VPS13CQ709C8 3753 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 ABCA2Q9BZC7 2435 aa8.13□□□□□ -1.11
LDLR-211ENST00000560173 ZNF469Q96JG9 3925 aaPredicted RBP8.12□□□□□ -1.11
LDLR-211ENST00000560173 IGHV2OR16-5A0A0B4J2B6 119 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 ARRDC5A6NEK1 342 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 SAC3D1A6NKF1 404 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 SOCS2O14508 198 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 IMPA2O14732 288 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 TMCC2O75069 709 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 TNFAIP8O95379 198 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 RAB36O95755 333 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 GASTP01350 101 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 CRYAAP02489 173 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 MMP7P09237 267 aaPredicted RBP8.12□□□□□ -1.11
LDLR-211ENST00000560173 CTLA4P16410 223 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 NPR2P20594 1047 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 GTF2A1P52655 376 aaPredicted RBP8.12□□□□□ -1.11
LDLR-211ENST00000560173 RAB1AP62820 205 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 HGFACQ04756 655 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 PIGFQ07326 219 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 BLMHQ13867 455 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 DAG1Q14118 895 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 TTC23Q5W5X9 447 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 RPL13AP3Q6NVV1 102 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 ZNF544Q6NX49 715 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 SHQ1Q6PI26 577 aaKnown RBP8.12□□□□□ -1.11
LDLR-211ENST00000560173 RASSF6Q6ZTQ3 369 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 PTCHD4Q6ZW05 846 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 SLC16A14Q7RTX9 510 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 TMEM179BQ7Z7N9 219 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 DTX2Q86UW9 622 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 ZNF584Q8IVC4 421 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 DHRSXQ8N5I4 330 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 OR10G2Q8NGC3 310 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 OR8D4Q8NGM9 314 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 TMEM171Q8WVE6 324 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 MS4A3Q96HJ5 214 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 ERMAPQ96PL5 475 aaPredicted RBP8.12□□□□□ -1.11
LDLR-211ENST00000560173 DHRS9Q9BPW9 319 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 KCNS3Q9BQ31 491 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 TRAF4Q9BUZ4 470 aaPredicted RBP8.12□□□□□ -1.11
LDLR-211ENST00000560173 IFT27Q9BW83 186 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 ANKRD60Q9BZ19 345 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 PLA2G12AQ9BZM1 189 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 SYT4Q9H2B2 425 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 EGLN3Q9H6Z9 239 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 FBXL3Q9UKT7 428 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 LAMP3Q9UQV4 416 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 RTTNQ86VV8 2226 aa8.12□□□□□ -1.11
LDLR-211ENST00000560173 OVOL3O00110 214 aa8.11□□□□□ -1.11
LDLR-211ENST00000560173 IDH3BO43837 385 aa8.11□□□□□ -1.11
LDLR-211ENST00000560173 SMPD2O60906 423 aa8.11□□□□□ -1.11
LDLR-211ENST00000560173 CD8AP01732 235 aa8.11□□□□□ -1.11
LDLR-211ENST00000560173 PAX1P15863 534 aa8.11□□□□□ -1.11
LDLR-211ENST00000560173 GSTM3P21266 225 aa8.11□□□□□ -1.11
LDLR-211ENST00000560173 MSR1P21757 451 aa8.11□□□□□ -1.11
LDLR-211ENST00000560173 TTKP33981 857 aa8.11□□□□□ -1.11
LDLR-211ENST00000560173 CDKN2AP42771 156 aaKnown RBP8.11□□□□□ -1.11
LDLR-211ENST00000560173 RAB39AQ14964 217 aa8.11□□□□□ -1.11
LDLR-211ENST00000560173 ETFDHQ16134 617 aa8.11□□□□□ -1.11
LDLR-211ENST00000560173 SGCAQ16586 387 aa8.11□□□□□ -1.11
LDLR-211ENST00000560173 SLC36A2Q495M3 483 aa8.11□□□□□ -1.11
LDLR-211ENST00000560173 CLEC12AQ5QGZ9 265 aa8.11□□□□□ -1.11
LDLR-211ENST00000560173 FAM27BQ5VT28 67 aa8.11□□□□□ -1.11
LDLR-211ENST00000560173 TMEM53Q6P2H8 277 aa8.11□□□□□ -1.11
LDLR-211ENST00000560173 CD300LDQ6UXZ3 194 aa8.11□□□□□ -1.11
LDLR-211ENST00000560173 KRTAP1-3Q8IUG1 177 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms