RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 ARPC4-TTLL3A0A0A6YYG9 625 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 H0YJX3 145 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 GABRB1P18505 474 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 NPR2P20594 1047 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 PAICSP22234 425 aaKnown RBP11.19□□□□□ -0.62
SHMT2-227ENST00000557269 KIR2DL3P43628 341 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 CDC42P60953 191 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 HSF2Q03933 536 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 APOFQ13790 326 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 KEAP1Q14145 624 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 KCNMB1Q16558 191 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 KLHL12Q53G59 568 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 C6orf52Q5T4I8 152 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 HIST2H2BCQ6DN03 193 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 IZUMO2Q6UXV1 221 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 WFDC8Q8IUA0 241 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 ENTHD1Q8IYW4 607 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 ZNF555Q8NEP9 628 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 OR8J1Q8NGP2 316 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 HSD17B8Q92506 261 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 TFAP2CQ92754 450 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 MED18Q9BUE0 208 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 ZNF416Q9BWM5 594 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 PRRG3Q9BZD7 231 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 VCXQ9H320 206 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 WDR76Q9H967 626 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 RASSF1Q9NS23 344 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 DNAJC27Q9NZQ0 273 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 LRRK2Q5S007 2527 aa11.19□□□□□ -0.62
SHMT2-227ENST00000557269 SIAH2O43255 324 aa11.18□□□□□ -0.62
SHMT2-227ENST00000557269 GLCEO94923 617 aa11.18□□□□□ -0.62
SHMT2-227ENST00000557269 MMP7P09237 267 aaPredicted RBP11.18□□□□□ -0.62
SHMT2-227ENST00000557269 CD79AP11912 226 aa11.18□□□□□ -0.62
SHMT2-227ENST00000557269 PPP3CBP16298 524 aa11.18□□□□□ -0.62
SHMT2-227ENST00000557269 MSR1P21757 451 aa11.18□□□□□ -0.62
SHMT2-227ENST00000557269 CAPGP40121 348 aa11.18□□□□□ -0.62
SHMT2-227ENST00000557269 VHLP40337 213 aa11.18□□□□□ -0.62
SHMT2-227ENST00000557269 RPS27P42677 84 aaKnown RBP11.18□□□□□ -0.62
SHMT2-227ENST00000557269 CAPZA2P47755 286 aa11.18□□□□□ -0.62
SHMT2-227ENST00000557269 UBE2NP61088 152 aaKnown RBP11.18□□□□□ -0.62
SHMT2-227ENST00000557269 SNRPGP62308 76 aaKnown RBP11.18□□□□□ -0.62
SHMT2-227ENST00000557269 TEKQ02763 1124 aa11.18□□□□□ -0.62
SHMT2-227ENST00000557269 GLO1Q04760 184 aa11.18□□□□□ -0.62
SHMT2-227ENST00000557269 PPA1Q15181 289 aa11.18□□□□□ -0.62
SHMT2-227ENST00000557269 NRN1LQ496H8 165 aa11.18□□□□□ -0.62
SHMT2-227ENST00000557269 ZNF691Q5VV52 312 aa11.18□□□□□ -0.62
SHMT2-227ENST00000557269 MDP1Q86V88 176 aa11.18□□□□□ -0.62
SHMT2-227ENST00000557269 MYPOPQ86VE0 399 aaPredicted RBP11.18□□□□□ -0.62
SHMT2-227ENST00000557269 P2RY8Q86VZ1 359 aa11.18□□□□□ -0.62
SHMT2-227ENST00000557269 OR6K6Q8NGW6 343 aa11.18□□□□□ -0.62
SHMT2-227ENST00000557269 RHOXF1Q8NHV9 184 aa11.18□□□□□ -0.62
SHMT2-227ENST00000557269 SMAP2Q8WU79 429 aaPredicted RBP11.18□□□□□ -0.62
SHMT2-227ENST00000557269 APH1BQ8WW43 257 aa11.18□□□□□ -0.62
SHMT2-227ENST00000557269 ZMYND19Q96E35 227 aaPredicted RBP11.18□□□□□ -0.62
SHMT2-227ENST00000557269 ZNF75AQ96N20 296 aa11.18□□□□□ -0.62
SHMT2-227ENST00000557269 ZNF582Q96NG8 517 aaPredicted RBP11.18□□□□□ -0.62
SHMT2-227ENST00000557269 DACH2Q96NX9 599 aa11.18□□□□□ -0.62
SHMT2-227ENST00000557269 SPOCK3Q9BQ16 436 aa11.18□□□□□ -0.62
SHMT2-227ENST00000557269 IMPAD1Q9NX62 359 aa11.18□□□□□ -0.62
SHMT2-227ENST00000557269 PLEKHB1Q9UF11 243 aaPredicted RBP11.18□□□□□ -0.62
SHMT2-227ENST00000557269 NDRG3Q9UGV2 375 aa11.18□□□□□ -0.62
SHMT2-227ENST00000557269 AMDHD2Q9Y303 409 aa11.18□□□□□ -0.62
SHMT2-227ENST00000557269 PRR14LQ5THK1 2151 aa11.17□□□□□ -0.62
SHMT2-227ENST00000557269 ADGRG4Q8IZF6 3080 aa11.17□□□□□ -0.62
SHMT2-227ENST00000557269 COL12A1Q99715 3063 aa11.17□□□□□ -0.62
SHMT2-227ENST00000557269 H0YAE9 185 aa11.17□□□□□ -0.62
SHMT2-227ENST00000557269 PRODHO43272 600 aa11.17□□□□□ -0.62
SHMT2-227ENST00000557269 ENTPD6O75354 484 aa11.17□□□□□ -0.62
SHMT2-227ENST00000557269 FARS2O95363 451 aaKnown RBP11.17□□□□□ -0.62
SHMT2-227ENST00000557269 HLA-DQA2P01906 255 aa11.17□□□□□ -0.62
SHMT2-227ENST00000557269 CELA3BP08861 270 aa11.17□□□□□ -0.62
SHMT2-227ENST00000557269 CST2P09228 141 aa11.17□□□□□ -0.62
SHMT2-227ENST00000557269 HOXB1P14653 301 aaPredicted RBP11.17□□□□□ -0.62
SHMT2-227ENST00000557269 ZNF32P17041 273 aa11.17□□□□□ -0.62
SHMT2-227ENST00000557269 GSTT1P30711 240 aa11.17□□□□□ -0.62
SHMT2-227ENST00000557269 ZNF83P51522 516 aa11.17□□□□□ -0.62
SHMT2-227ENST00000557269 SNCBQ16143 134 aa11.17□□□□□ -0.62
SHMT2-227ENST00000557269 NXNL2Q5VZ03 156 aa11.17□□□□□ -0.62
SHMT2-227ENST00000557269 TTC23Q5W5X9 447 aa11.17□□□□□ -0.62
SHMT2-227ENST00000557269 CORO6Q6QEF8 472 aa11.17□□□□□ -0.62
SHMT2-227ENST00000557269 USP51Q70EK9 711 aa11.17□□□□□ -0.62
SHMT2-227ENST00000557269 MEPCEQ7L2J0 689 aaKnown RBP11.17□□□□□ -0.62
SHMT2-227ENST00000557269 SLC16A14Q7RTX9 510 aa11.17□□□□□ -0.62
SHMT2-227ENST00000557269 TRUB1Q8WWH5 349 aaKnown RBP11.17□□□□□ -0.62
SHMT2-227ENST00000557269 MUCL1Q96DR8 90 aa11.17□□□□□ -0.62
SHMT2-227ENST00000557269 TEAD3Q99594 435 aa11.17□□□□□ -0.62
SHMT2-227ENST00000557269 USB1Q9BQ65 265 aaKnown RBP11.17□□□□□ -0.62
SHMT2-227ENST00000557269 VCX3BQ9H321 246 aa11.17□□□□□ -0.62
SHMT2-227ENST00000557269 MOKQ9UQ07 419 aa11.17□□□□□ -0.62
SHMT2-227ENST00000557269 LHFPL6Q9Y693 200 aa11.17□□□□□ -0.62
SHMT2-227ENST00000557269 COMMD3-BMI1R4GMX3 469 aa11.17□□□□□ -0.62
SHMT2-227ENST00000557269 DEFB108AA8MXU0 73 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 SELENOFO60613 162 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 WBP4O75554 376 aaKnown RBP11.16□□□□□ -0.62
SHMT2-227ENST00000557269 EPXP11678 715 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 CBR1P16152 277 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 HOXC12P31275 282 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 FMO3P31513 532 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 GUCA1AP43080 201 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-227ENST00000557269 HCCSP53701 268 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms