RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 RARRES3Q9UL19 164 aa16.16■□□□□ 0.18
VIM-209ENST00000544301 IGHV5-10-1A0A0J9YXX1 117 aa16.16■□□□□ 0.18
VIM-209ENST00000544301 NPIPA5E9PKD4 350 aa16.16■□□□□ 0.18
VIM-209ENST00000544301 ITGA5P08648 1049 aa16.16■□□□□ 0.18
VIM-209ENST00000544301 FBXO45P0C2W1 286 aa16.16■□□□□ 0.18
VIM-209ENST00000544301 EFNB2P52799 333 aa16.16■□□□□ 0.18
VIM-209ENST00000544301 FMODQ06828 376 aa16.16■□□□□ 0.18
VIM-209ENST00000544301 FOXF1Q12946 379 aa16.16■□□□□ 0.18
VIM-209ENST00000544301 ANGPT1Q15389 498 aa16.16■□□□□ 0.18
VIM-209ENST00000544301 LYSMD4Q5XG99 296 aa16.16■□□□□ 0.18
VIM-209ENST00000544301 ANKRD16Q6P6B7 361 aa16.16■□□□□ 0.18
VIM-209ENST00000544301 TSSK4Q6SA08 328 aa16.16■□□□□ 0.18
VIM-209ENST00000544301 MAMSTRQ6ZN01 415 aa16.16■□□□□ 0.18
VIM-209ENST00000544301 LUZP2Q86TE4 346 aa16.16■□□□□ 0.18
VIM-209ENST00000544301 SLC26A10Q8NG04 563 aa16.16■□□□□ 0.18
VIM-209ENST00000544301 ZNF431Q8TF32 576 aaPredicted RBP16.16■□□□□ 0.18
VIM-209ENST00000544301 MGAT4AQ9UM21 535 aa16.16■□□□□ 0.18
VIM-209ENST00000544301 NPIPA1Q9UND3 350 aa16.16■□□□□ 0.18
VIM-209ENST00000544301 DHDHQ9UQ10 334 aa16.16■□□□□ 0.18
VIM-209ENST00000544301 VSTM2BA6NLU5 285 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 ZNF208O43345 1280 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 PRAF2O60831 178 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 SRSF10O75494 262 aaKnown RBP16.15■□□□□ 0.18
VIM-209ENST00000544301 NAGAP17050 411 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 DHPSP49366 369 aaPredicted RBP16.15■□□□□ 0.18
VIM-209ENST00000544301 VEGFCP49767 419 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 DAP3P51398 398 aaKnown RBP16.15■□□□□ 0.18
VIM-209ENST00000544301 PIAS4Q8N2W9 510 aaPredicted RBP16.15■□□□□ 0.18
VIM-209ENST00000544301 OR11H4Q8NGC9 324 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 ASB5Q8WWX0 329 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 DDIT4LQ96D03 193 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 CHST11Q9NPF2 352 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 SIT1Q9Y3P8 196 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 TTLL8A6PVC2 850 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 SHISA8B8ZZ34 492 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 SIGLEC6O43699 453 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 CTAG2O75638 210 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 TGM6O95932 706 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 FREM3P0C091 2139 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 FOSL2P15408 326 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 POU3F4P49335 361 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 MAP2K6P52564 334 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 RAB11BQ15907 218 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 ZNF385CQ66K41 422 aaPredicted RBP16.15■□□□□ 0.18
VIM-209ENST00000544301 FAAP20Q6NZ36 180 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 DNM1P34Q6PK57 102 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 CPEB2Q7Z5Q1 589 aaKnown RBP16.15■□□□□ 0.18
VIM-209ENST00000544301 OR5L2Q8NGL0 311 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 TTC9Q92623 222 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 PIGKQ92643 395 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 KCNK17Q96T54 332 aa16.15■□□□□ 0.18
VIM-209ENST00000544301 ASCC3Q8N3C0 2202 aaKnown RBP16.14■□□□□ 0.17
VIM-209ENST00000544301 A0A1B0GVI7 797 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 GGT3PA6NGU5 568 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 NPIPB13A6NJU9 1138 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 NPIPB4C9JG80 1138 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 ETV2O00321 342 aaPredicted RBP16.14■□□□□ 0.17
VIM-209ENST00000544301 SLC17A2O00624 439 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 ARPC1BO15143 372 aaKnown RBP16.14■□□□□ 0.17
VIM-209ENST00000544301 ZNF823P16415 610 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 HTR2BP41595 481 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 ZP1P60852 638 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 HSF1Q00613 529 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 POU3F1Q03052 451 aaPredicted RBP16.14■□□□□ 0.17
VIM-209ENST00000544301 TLE3Q04726 772 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 C2orf76Q3KRA6 126 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 TMEM225Q6GV28 225 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 FAM166AQ6J272 317 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 BIVMQ86UB2 503 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 SAP25Q8TEE9 199 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 SNAPC3Q92966 411 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 FAM3DQ96BQ1 224 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 CCDC74BQ96LY2 380 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 NOX3Q9HBY0 568 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 FSCN3Q9NQT6 498 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 PTTG3PQ9NZH4 202 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 KLRF1Q9NZS2 232 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 FBXL3Q9UKT7 428 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 R4GMQ9 66 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 WDR87Q6ZQQ6 2873 aa16.14■□□□□ 0.17
VIM-209ENST00000544301 IGKV1D-43A0A0B4J1Z2 117 aa16.13■□□□□ 0.17
VIM-209ENST00000544301 A0A1B0GUH1 482 aa16.13■□□□□ 0.17
VIM-209ENST00000544301 EFNA2O43921 213 aa16.13■□□□□ 0.17
VIM-209ENST00000544301 ONECUT2O95948 504 aa16.13■□□□□ 0.17
VIM-209ENST00000544301 ALDOBP05062 364 aa16.13■□□□□ 0.17
VIM-209ENST00000544301 PCK2Q16822 640 aa16.13■□□□□ 0.17
VIM-209ENST00000544301 LINC00303Q3SY05 128 aa16.13■□□□□ 0.17
VIM-209ENST00000544301 LCN10Q6JVE6 187 aa16.13■□□□□ 0.17
VIM-209ENST00000544301 Q6ZTK2 550 aa16.13■□□□□ 0.17
VIM-209ENST00000544301 DCXRQ7Z4W1 244 aa16.13■□□□□ 0.17
VIM-209ENST00000544301 GPR137Q96N19 417 aa16.13■□□□□ 0.17
VIM-209ENST00000544301 SPSB2Q99619 263 aa16.13■□□□□ 0.17
VIM-209ENST00000544301 KCNK15Q9H427 330 aa16.13■□□□□ 0.17
VIM-209ENST00000544301 DLL4Q9NR61 685 aa16.13■□□□□ 0.17
VIM-209ENST00000544301 MED29Q9NX70 200 aa16.13■□□□□ 0.17
VIM-209ENST00000544301 SLC23A1Q9UHI7 598 aa16.13■□□□□ 0.17
VIM-209ENST00000544301 CDV3Q9UKY7 258 aaKnown RBP16.13■□□□□ 0.17
VIM-209ENST00000544301 EMC9Q9Y3B6 208 aa16.13■□□□□ 0.17
VIM-209ENST00000544301 LOC100289279A0A1B0GTE1 492 aa16.13■□□□□ 0.17
VIM-209ENST00000544301 LIPT2A6NK58 231 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms