RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 SLC7A6OSQ96CW6 309 aaPredicted RBP4.54□□□□□ -1.68
CLIP1-217ENST00000543205 DDIT4LQ96D03 193 aa4.54□□□□□ -1.68
CLIP1-217ENST00000543205 MCHR1Q99705 422 aa4.54□□□□□ -1.68
CLIP1-217ENST00000543205 ZNF416Q9BWM5 594 aa4.54□□□□□ -1.68
CLIP1-217ENST00000543205 RSPO3Q9BXY4 272 aaPredicted RBP4.54□□□□□ -1.68
CLIP1-217ENST00000543205 VCX2Q9H322 139 aa4.54□□□□□ -1.68
CLIP1-217ENST00000543205 TMEM185BQ9H7F4 350 aa4.54□□□□□ -1.68
CLIP1-217ENST00000543205 CTPS2Q9NRF8 586 aa4.54□□□□□ -1.68
CLIP1-217ENST00000543205 SAMD4AQ9UPU9 718 aaKnown RBP4.54□□□□□ -1.68
CLIP1-217ENST00000543205 USP9YO00507 2555 aaPredicted RBP4.54□□□□□ -1.68
CLIP1-217ENST00000543205 BOD1L1Q8NFC6 3051 aa4.54□□□□□ -1.68
CLIP1-217ENST00000543205 TMED7-TICAM2A0A0A6YYA0 188 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 TMEM72A0PK05 275 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 CPSF4LA6NMK7 179 aaKnown RBP4.53□□□□□ -1.68
CLIP1-217ENST00000543205 TNFSF11O14788 317 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 ARPC2O15144 300 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 EFNA2O43921 213 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 SERPINA3P01011 423 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 ANXA7P20073 488 aaKnown RBP4.53□□□□□ -1.68
CLIP1-217ENST00000543205 HTR2AP28223 471 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 IFNA8P32881 189 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 OR1E2P47887 323 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 ZNF136P52737 540 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 SUCLG1P53597 346 aaKnown RBP4.53□□□□□ -1.68
CLIP1-217ENST00000543205 DLX5P56178 289 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 CLDN15P56746 228 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 CLDN20P56880 219 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 ACTR3P61158 418 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 RIN1Q13671 783 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 OR1Q1Q15612 314 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 ENTPD8Q5MY95 495 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 HBMQ6B0K9 141 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 ULK3Q6PHR2 472 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 DHFR2Q86XF0 187 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 ADGRG3Q86Y34 549 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 LACC1Q8IV20 430 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 TIGD4Q8IY51 512 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 OR6T1Q8NGN1 323 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 OR10S1Q8NGN2 331 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 ZPLD1Q8TCW7 415 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 SLC25A43Q8WUT9 341 aaPredicted RBP4.53□□□□□ -1.68
CLIP1-217ENST00000543205 GEMIN6Q8WXD5 167 aaKnown RBP4.53□□□□□ -1.68
CLIP1-217ENST00000543205 DACT3Q96B18 629 aaPredicted RBP4.53□□□□□ -1.68
CLIP1-217ENST00000543205 SPSB1Q96BD6 273 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 CCDC124Q96CT7 223 aaKnown RBP4.53□□□□□ -1.68
CLIP1-217ENST00000543205 OR5B2Q96R09 309 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 WFDC6Q9BQY6 131 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 CALHM2Q9HA72 323 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 TIGARQ9NQ88 270 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 DCAF13Q9NV06 445 aaKnown RBP4.53□□□□□ -1.68
CLIP1-217ENST00000543205 PAQR5Q9NXK6 330 aaPredicted RBP4.53□□□□□ -1.68
CLIP1-217ENST00000543205 ZKSCAN7Q9P0L1 754 aaPredicted RBP4.53□□□□□ -1.68
CLIP1-217ENST00000543205 KIAA1456Q9P272 454 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 MEMO1Q9Y316 297 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 TMED7Q9Y3B3 224 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 SPTBN1Q01082 2364 aaKnown RBP4.53□□□□□ -1.68
CLIP1-217ENST00000543205 A0A0B4J2E0 115 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 A0A0J9YW62 118 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 A0A1B0GWA3 101 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 A0A1B0GX12 115 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 TRAPPC13A5PLN9 417 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 A8MVM7 634 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 HS3ST1O14792 307 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 ZNF208O43345 1280 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 SYNGR4O95473 234 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 IFNW1P05000 195 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 PNMTP11086 282 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 TNFRSF1BP20333 461 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 POU1F1P28069 291 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 BMI1P35226 326 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 TAS2R41P59536 307 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 PMPCAQ10713 525 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 TRAP1Q12931 704 aaKnown RBP4.53□□□□□ -1.68
CLIP1-217ENST00000543205 PDZK1IP1Q13113 114 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 RNPS1Q15287 305 aaKnown RBP4.53□□□□□ -1.68
CLIP1-217ENST00000543205 NPTX1Q15818 432 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 ACSF3Q4G176 576 aaPredicted RBP4.53□□□□□ -1.68
CLIP1-217ENST00000543205 SYT14P1Q58G82 188 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 MTX3Q5HYI7 312 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 ALG10BQ5I7T1 473 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 NSUN5P2Q63ZY6 315 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 TMEM200BQ69YZ2 307 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 ZNF613Q6PF04 617 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 P4HA3Q7Z4N8 544 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 VTCN1Q7Z7D3 282 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 GGNQ86UU5 652 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 CYP4Z1Q86W10 505 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 SPATA24Q86W54 205 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 RBM45Q8IUH3 476 aaKnown RBP4.53□□□□□ -1.68
CLIP1-217ENST00000543205 SETD9Q8NE22 299 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 OR4D11Q8NGI4 311 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 OR10D3Q8NH80 312 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 OR2V1Q8NHB1 315 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 TBC1D15Q8TC07 691 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 OSTF1Q92882 214 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 POP5Q969H6 163 aaKnown RBP4.53□□□□□ -1.68
CLIP1-217ENST00000543205 SLC25A28Q96A46 364 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 ASB9Q96DX5 294 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 SLC47A1Q96FL8 570 aa4.53□□□□□ -1.68
CLIP1-217ENST00000543205 PYURFQ96I23 114 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms