RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 DYRK1BQ9Y463 629 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 URGCP-MRPS24S4R325 110 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 PDCD11Q14690 1871 aaKnown RBP8.59□□□□□ -1.03
CLIP1-214ENST00000540539 ACOT7O00154 380 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 CYB5BO43169 146 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 DOK2O60496 412 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 IFNA6P05013 189 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 RAB6AP20340 208 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 ADORA2BP29275 332 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 AKT2P31751 481 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 IGFALSP35858 605 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 SCAPQ12770 1279 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 WDR73Q6P4I2 378 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 SLC22A25Q6T423 547 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 OR1J2Q8NGS2 313 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 OR13C2Q8NGS9 318 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 PGAM5Q96HS1 289 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 MRGPRX1Q96LB2 322 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 APOLD1Q96LR9 279 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 TP53RKQ96S44 253 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 TIMP4Q99727 224 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 SCRT1Q9BWW7 348 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 EBPLQ9BY08 206 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 OR8D2Q9GZM6 311 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 TCEAL2Q9H3H9 227 aaPredicted RBP8.59□□□□□ -1.03
CLIP1-214ENST00000540539 SCML2Q9UQR0 700 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 LOC730098B7Z3J9 87 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 AQP7O14520 342 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 GEMIN2O14893 280 aaKnown RBP8.58□□□□□ -1.04
CLIP1-214ENST00000540539 PLPP2O43688 288 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 RAMP1O60894 148 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 PMS2P2O95744 297 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 EPHX1P07099 455 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 OR5AC1P0C628 307 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 COX7A2P14406 83 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 FAUP35544 74 aaKnown RBP8.58□□□□□ -1.04
CLIP1-214ENST00000540539 NAA10P41227 235 aaPredicted RBP8.58□□□□□ -1.04
CLIP1-214ENST00000540539 IL2P60568 153 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 PCGF3Q3KNV8 242 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 NKAIN1Q4KMZ8 207 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 TMEM69Q5SWH9 247 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 COL5A1-AS1Q5SY13 56 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 MARC1Q5VT66 337 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 RTL6Q6ICC9 239 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 GRHL2Q6ISB3 625 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 CNKSR3Q6P9H4 555 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 LRP11Q86VZ4 500 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 LRRC56Q8IYG6 542 aaPredicted RBP8.58□□□□□ -1.04
CLIP1-214ENST00000540539 ZBTB2Q8N680 514 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 SIRT6Q8N6T7 355 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 C17orf47Q8NEP4 570 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 OR4K14Q8NGD5 310 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 SLC7A13Q8TCU3 470 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 EDAQ92838 391 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 APIPQ96GX9 242 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 SEPT5Q99719 369 aaPredicted RBP8.58□□□□□ -1.04
CLIP1-214ENST00000540539 GPA33Q99795 319 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 COMMD4Q9H0A8 199 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 HAO2Q9NYQ3 351 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 CORO2BQ9UQ03 480 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 ARL5AQ9Y689 179 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 DRGXA6NNA5 263 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 FLRT2O43155 660 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 NME6O75414 186 aaPredicted RBP8.58□□□□□ -1.04
CLIP1-214ENST00000540539 AIFM1O95831 613 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 PDYNP01213 254 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 MMP2P08253 660 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 MAOAP21397 527 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 NT5EP21589 574 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 CLDN12P56749 244 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 RPS15P62841 145 aaKnown RBP8.58□□□□□ -1.04
CLIP1-214ENST00000540539 ACVR1Q04771 509 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 IHHQ14623 411 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 ACSM3Q53FZ2 586 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 EXOSC6Q5RKV6 272 aaKnown RBP8.58□□□□□ -1.04
CLIP1-214ENST00000540539 LCTLQ6UWM7 567 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 TAS1R1Q7RTX1 841 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 TMPRSS7Q7RTY8 843 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 BIVMQ86UB2 503 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 ARHGAP12Q8IWW6 846 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 ZNF100Q8IYN0 542 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 GABRG1Q8N1C3 465 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 OR4L1Q8NH43 312 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 OR5W2Q8NH69 310 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 C1orf216Q8TAB5 229 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 SFXN5Q8TD22 340 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 CD200R1Q8TD46 325 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 SMARCD2Q92925 531 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 ZNF430Q9H8G1 570 aaPredicted RBP8.58□□□□□ -1.04
CLIP1-214ENST00000540539 IL17CQ9P0M4 197 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 B3GAT1Q9P2W7 334 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 FBXO4Q9UKT5 387 aa8.58□□□□□ -1.04
CLIP1-214ENST00000540539 FARSAQ9Y285 508 aaKnown RBP8.58□□□□□ -1.04
CLIP1-214ENST00000540539 POLR3KQ9Y2Y1 108 aaPredicted RBP8.58□□□□□ -1.04
CLIP1-214ENST00000540539 AK6Q9Y3D8 172 aaKnown RBP8.58□□□□□ -1.04
CLIP1-214ENST00000540539 LAMA2P24043 3122 aaKnown RBP8.58□□□□□ -1.04
CLIP1-214ENST00000540539 SMIM28A0A1B0GU29 152 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 FAM221AA4D161 298 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 MGAT4DA6NG13 374 aa8.57□□□□□ -1.04
CLIP1-214ENST00000540539 ARL5CA6NH57 179 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms