RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 SDR9C7Q8NEX9 313 aa12.6□□□□□ -0.39
CPSF1-206ENST00000531480 OR52E2Q8NGJ4 325 aa12.6□□□□□ -0.39
CPSF1-206ENST00000531480 FGFBP3Q8TAT2 258 aa12.6□□□□□ -0.39
CPSF1-206ENST00000531480 NSMAFQ92636 917 aa12.6□□□□□ -0.39
CPSF1-206ENST00000531480 PLPPR2Q96GM1 343 aa12.6□□□□□ -0.39
CPSF1-206ENST00000531480 HS3ST6Q96QI5 342 aa12.6□□□□□ -0.39
CPSF1-206ENST00000531480 WACQ9BTA9 647 aa12.6□□□□□ -0.39
CPSF1-206ENST00000531480 ESRP2Q9H6T0 727 aaKnown RBP12.6□□□□□ -0.39
CPSF1-206ENST00000531480 PLEKHF2Q9H8W4 249 aa12.6□□□□□ -0.39
CPSF1-206ENST00000531480 NOX3Q9HBY0 568 aa12.6□□□□□ -0.39
CPSF1-206ENST00000531480 POLE4Q9NR33 117 aa12.6□□□□□ -0.39
CPSF1-206ENST00000531480 B9D1Q9UPM9 204 aa12.6□□□□□ -0.39
CPSF1-206ENST00000531480 LRCH1Q9Y2L9 728 aa12.6□□□□□ -0.39
CPSF1-206ENST00000531480 PLCE1Q9P212 2302 aa12.6□□□□□ -0.39
CPSF1-206ENST00000531480 ROS1P08922 2347 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 IGHV1-18A0A0C4DH31 117 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 ZAR1LA6NP61 321 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 SURF4O15260 269 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 RENP00797 406 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 HLA-HP01893 362 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 HMGN1P05114 100 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 SCG5P05408 212 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 CST2P09228 141 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 ZNF14P17017 642 aaPredicted RBP12.59□□□□□ -0.39
CPSF1-206ENST00000531480 IGFBP5P24593 272 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 CD40P25942 277 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 LAP3P28838 519 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 EPHA2P29317 976 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 LSM6P62312 80 aaKnown RBP12.59□□□□□ -0.39
CPSF1-206ENST00000531480 EFNB1P98172 346 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 BSPH1Q075Z2 132 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 IL18R1Q13478 541 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 ENDOGQ14249 297 aaKnown RBP12.59□□□□□ -0.39
CPSF1-206ENST00000531480 DNM1P34Q6PK57 102 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 TMEM108Q6UXF1 575 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 SYT9Q86SS6 491 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 IQCF1Q8N6M8 205 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 SETD9Q8NE22 299 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 NRG4Q8WWG1 115 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 NANOS1Q8WY41 292 aaKnown RBP12.59□□□□□ -0.39
CPSF1-206ENST00000531480 TSSK2Q96PF2 358 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 SLC38A2Q96QD8 506 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 SH3GL3Q99963 347 aa12.59□□□□□ -0.39
CPSF1-206ENST00000531480 CLEC4MQ9H2X3 399 aaPredicted RBP12.59□□□□□ -0.39
CPSF1-206ENST00000531480 RPRD1BQ9NQG5 326 aaKnown RBP12.59□□□□□ -0.39
CPSF1-206ENST00000531480 COA3Q9Y2R0 106 aaPredicted RBP12.59□□□□□ -0.39
CPSF1-206ENST00000531480 EI24O14681 340 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 IFNGP01579 166 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 MSR1P21757 451 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 POU1F1P28069 291 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 ZNF83P51522 516 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 TUBA1BP68363 451 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 TUBA4AP68366 448 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 NPRL3Q12980 569 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 CRMP1Q14194 572 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 GSG1Q2KHT4 349 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 SLC36A2Q495M3 483 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 SLX4IPQ5VYV7 408 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 C12orf73Q69YU5 71 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 TUBA1AQ71U36 451 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 MDP1Q86V88 176 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 CDC20BQ86Y33 519 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 ZNF584Q8IVC4 421 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 CYB561A3Q8NBI2 242 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 SLC26A10Q8NG04 563 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 LILRB1Q8NHL6 650 aaPredicted RBP12.58□□□□□ -0.4
CPSF1-206ENST00000531480 HTRA1Q92743 480 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 PTP4A1Q93096 173 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 FBXO17Q96EF6 278 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 PIK3IP1Q96FE7 263 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 RADILQ96JH8 1075 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 APOL4Q9BPW4 351 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 PRRG3Q9BZD7 231 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 FBXL3Q9UKT7 428 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 CSMD2Q7Z408 3487 aa12.58□□□□□ -0.4
CPSF1-206ENST00000531480 SPG11Q96JI7 2443 aa12.57□□□□□ -0.4
CPSF1-206ENST00000531480 RIIAD1A6NNX1 92 aa12.57□□□□□ -0.4
CPSF1-206ENST00000531480 SHISA9B4DS77 424 aa12.57□□□□□ -0.4
CPSF1-206ENST00000531480 SERPINA5P05154 406 aa12.57□□□□□ -0.4
CPSF1-206ENST00000531480 CD3EP07766 207 aa12.57□□□□□ -0.4
CPSF1-206ENST00000531480 CECR9P0C854 216 aa12.57□□□□□ -0.4
CPSF1-206ENST00000531480 ZNF3P17036 446 aa12.57□□□□□ -0.4
CPSF1-206ENST00000531480 KRTAP10-9P60411 292 aa12.57□□□□□ -0.4
CPSF1-206ENST00000531480 RAB1AP62820 205 aa12.57□□□□□ -0.4
CPSF1-206ENST00000531480 HSF2Q03933 536 aa12.57□□□□□ -0.4
CPSF1-206ENST00000531480 GLO1Q04760 184 aa12.57□□□□□ -0.4
CPSF1-206ENST00000531480 TMEM236Q5W0B7 351 aa12.57□□□□□ -0.4
CPSF1-206ENST00000531480 KRT80Q6KB66 452 aa12.57□□□□□ -0.4
CPSF1-206ENST00000531480 SLC16A14Q7RTX9 510 aa12.57□□□□□ -0.4
CPSF1-206ENST00000531480 MYPOPQ86VE0 399 aaPredicted RBP12.57□□□□□ -0.4
CPSF1-206ENST00000531480 IL17RDQ8NFM7 739 aa12.57□□□□□ -0.4
CPSF1-206ENST00000531480 OR2T4Q8NH00 348 aa12.57□□□□□ -0.4
CPSF1-206ENST00000531480 ZNRF4Q8WWF5 429 aa12.57□□□□□ -0.4
CPSF1-206ENST00000531480 SLC29A1Q99808 456 aa12.57□□□□□ -0.4
CPSF1-206ENST00000531480 ZNF416Q9BWM5 594 aa12.57□□□□□ -0.4
CPSF1-206ENST00000531480 C1QTNF6Q9BXI9 259 aa12.57□□□□□ -0.4
CPSF1-206ENST00000531480 FN3KQ9H479 309 aa12.57□□□□□ -0.4
CPSF1-206ENST00000531480 SRA1Q9HD15 236 aaKnown RBP12.57□□□□□ -0.4
CPSF1-206ENST00000531480 RNF115Q9Y4L5 304 aa12.57□□□□□ -0.4
CPSF1-206ENST00000531480 RTTNQ86VV8 2226 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms