RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 UBTD1Q9HAC8 227 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 SRA1Q9HD15 236 aaKnown RBP12.41□□□□□ -0.42
NUP54-216ENST00000514901 POLE4Q9NR33 117 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 POU2F3Q9UKI9 436 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 B9D1Q9UPM9 204 aa12.41□□□□□ -0.42
NUP54-216ENST00000514901 DSCAMO60469 2012 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 TEX15Q9BXT5 2789 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 OR6C68A6NDL8 312 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 RIIAD1A6NNX1 92 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 TMCC2O75069 709 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 RAF1P04049 648 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 ZNF14P17017 642 aaPredicted RBP12.4□□□□□ -0.42
NUP54-216ENST00000514901 ZNF3P17036 446 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 DNASE1P24855 282 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 CDH11P55287 796 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 NAAAQ02083 359 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 GLO1Q04760 184 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 GINS1Q14691 196 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 KCNMB1Q16558 191 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 ZNF362Q5T0B9 420 aaPredicted RBP12.4□□□□□ -0.42
NUP54-216ENST00000514901 KDM4DQ6B0I6 523 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 PAMR1Q6UXH9 720 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 CDH24Q86UP0 819 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 ALDH16A1Q8IZ83 802 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 OR6V1Q8N148 313 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 SDR9C7Q8NEX9 313 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 KBTBD8Q8NFY9 601 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 OR2T4Q8NH00 348 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 STMN2Q93045 179 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 FBXW5Q969U6 566 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 ZNF75AQ96N20 296 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 PKP2Q99959 881 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 RBM4BQ9BQ04 359 aaKnown RBP12.4□□□□□ -0.42
NUP54-216ENST00000514901 RBM4Q9BWF3 364 aaKnown RBP12.4□□□□□ -0.42
NUP54-216ENST00000514901 RERGLQ9H628 205 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 RPRD1BQ9NQG5 326 aaKnown RBP12.4□□□□□ -0.42
NUP54-216ENST00000514901 CMC2Q9NRP2 79 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 KRT84Q9NSB2 600 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 FAIMQ9NVQ4 179 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 CISD1Q9NZ45 108 aaKnown RBP12.4□□□□□ -0.42
NUP54-216ENST00000514901 ST6GALNAC2Q9UJ37 374 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 OAZ3Q9UMX2 235 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 COA3Q9Y2R0 106 aaPredicted RBP12.4□□□□□ -0.42
NUP54-216ENST00000514901 TIMM10BQ9Y5J6 103 aa12.4□□□□□ -0.42
NUP54-216ENST00000514901 IGLV1-36A0A0B4J1U3 117 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 IQCMA0A1B0GVH7 501 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 CYSRT1A8MQ03 144 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 VSTM5A8MXK1 200 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 MMP7P09237 267 aaPredicted RBP12.39□□□□□ -0.43
NUP54-216ENST00000514901 PATE4P0C8F1 98 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 CENPAP49450 140 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 SLC25A1P53007 311 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 CRISP1P54107 249 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 CDK5Q00535 292 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 HSF2Q03933 536 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 KEAP1Q14145 624 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 RAB39AQ14964 217 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 SLC37A3Q8NCC5 494 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 ICA1LQ8NDH6 482 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 OR1J2Q8NGS2 313 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 LILRB1Q8NHL6 650 aaPredicted RBP12.39□□□□□ -0.43
NUP54-216ENST00000514901 FGFBP3Q8TAT2 258 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 PIGTQ969N2 578 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 TSSK2Q96PF2 358 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 DHRS9Q9BPW9 319 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 ZNF416Q9BWM5 594 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 SLC25A19Q9HC21 320 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 MOKQ9UQ07 419 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 SPEF1Q9Y4P9 236 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 ATP23Q9Y6H3 246 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 ARID1AO14497 2285 aa12.39□□□□□ -0.43
NUP54-216ENST00000514901 IGHV2OR16-5A0A0B4J2B6 119 aa12.38□□□□□ -0.43
NUP54-216ENST00000514901 DCTN6O00399 190 aa12.38□□□□□ -0.43
NUP54-216ENST00000514901 CELA3BP08861 270 aa12.38□□□□□ -0.43
NUP54-216ENST00000514901 ZNF32P17041 273 aa12.38□□□□□ -0.43
NUP54-216ENST00000514901 PAICSP22234 425 aaKnown RBP12.38□□□□□ -0.43
NUP54-216ENST00000514901 BLVRAP53004 296 aa12.38□□□□□ -0.43
NUP54-216ENST00000514901 SCRN3Q0VDG4 424 aa12.38□□□□□ -0.43
NUP54-216ENST00000514901 ENDOGQ14249 297 aaKnown RBP12.38□□□□□ -0.43
NUP54-216ENST00000514901 ACSM5Q6NUN0 579 aa12.38□□□□□ -0.43
NUP54-216ENST00000514901 ZNF544Q6NX49 715 aa12.38□□□□□ -0.43
NUP54-216ENST00000514901 PQLC1Q8N2U9 271 aa12.38□□□□□ -0.43
NUP54-216ENST00000514901 CYB561A3Q8NBI2 242 aa12.38□□□□□ -0.43
NUP54-216ENST00000514901 SMAP2Q8WU79 429 aaPredicted RBP12.38□□□□□ -0.43
NUP54-216ENST00000514901 C11orf40Q8WZ69 217 aa12.38□□□□□ -0.43
NUP54-216ENST00000514901 NRGNQ92686 78 aa12.38□□□□□ -0.43
NUP54-216ENST00000514901 HTRA1Q92743 480 aa12.38□□□□□ -0.43
NUP54-216ENST00000514901 MBD6Q96DN6 1003 aa12.38□□□□□ -0.43
NUP54-216ENST00000514901 FBXO17Q96EF6 278 aa12.38□□□□□ -0.43
NUP54-216ENST00000514901 PRRG3Q9BZD7 231 aa12.38□□□□□ -0.43
NUP54-216ENST00000514901 NOX3Q9HBY0 568 aa12.38□□□□□ -0.43
NUP54-216ENST00000514901 PDZD2O15018 2839 aa12.38□□□□□ -0.43
NUP54-216ENST00000514901 SAC3D1A6NKF1 404 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 E7EQL1 145 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 ATP6V1G2-DDX39BF2Z307 99 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 ATE1O95260 518 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 ZNF35P13682 527 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 CD53P19397 219 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 IGFBP5P24593 272 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 PPP2R2BQ00005 443 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms