RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 COX14Q96I36 57 aa14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 RNF32Q9H0A6 362 aa14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 POFUT1Q9H488 388 aa14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 RNF215Q9Y6U7 377 aa14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 DAP3P51398 398 aaKnown RBP14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 AWAT2Q6E213 333 aa14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 OVCH1Q7RTY7 1134 aa14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 AGBL5Q8NDL9 886 aa14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 GPR32P1Q8NGA4 272 aa14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 PISDQ9UG56 409 aa14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 A4GNTQ9UNA3 340 aa14.89□□□□□ -0.03
CCDC88B-209ENST00000494080 SPI1P17947 270 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 ATF1P18846 271 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 CPT2P23786 658 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 RAB5CP51148 216 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 BDH1Q02338 343 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 TMEM201Q5SNT2 666 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 ULBP3Q9BZM4 244 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 UNKLQ9H9P5 680 aaKnown RBP14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 CYB5R1Q9UHQ9 305 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 OR5H14A6NHG9 310 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 ZNF98A6NK75 572 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 SNRPGP15A8MWD9 76 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 TSTD3H0UI37 97 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 HTR3BO95264 441 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 CD14P08571 375 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 SELENOPP49908 381 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 CSRP3P50461 194 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 CCR5P51681 352 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 TAS2R31P59538 309 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 DCDP81605 110 aaKnown RBP14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 PLP2Q04941 152 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 TMEM176BQ3YBM2 270 aaPredicted RBP14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 MIA3Q5JRA6 1907 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 PIKFYVEQ9Y2I7 2098 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 ATRXP46100 2492 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 SIGLEC6O43699 453 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 THBS1P07996 1170 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 CLUP10909 449 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 CSNK2A1P68400 391 aaPredicted RBP14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 DUSP8Q13202 625 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 MELKQ14680 651 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 EBPQ15125 230 aaKnown RBP14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 ABHD17BQ5VST6 288 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 CSNK2A3Q8NEV1 391 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 PTDSS2Q9BVG9 487 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 PARPBPQ9NWS1 579 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 B4GALT7Q9UBV7 327 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 PUS1Q9Y606 427 aaKnown RBP eCLIP14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 NSG1A0A0A6YYJ2 146 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 TMEM269A0A1B0GVZ9 245 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 A6NIZ1 184 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 CAPZBP47756 277 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 RAP1BP61224 184 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 RAP1AP62834 184 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 TRIM61Q5EBN2 209 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 PHYHIPQ92561 330 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 SLC25A21Q9BQT8 299 aaPredicted RBP14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 GFOD1Q9NXC2 390 aa14.88□□□□□ -0.03
CCDC88B-209ENST00000494080 IFITM5A6NNB3 132 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 SELENOFO60613 162 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 DNAJB6O75190 326 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 AGERQ15109 404 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 Q5BKY6 102 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 RNF165Q6ZSG1 346 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 MMACHCQ9Y4U1 282 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 ETV7Q9Y603 341 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 PYCARD-AS1I3L0S3 204 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 NSA2O95478 260 aaKnown RBP14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 CD79BP40259 229 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 SNU13P55769 128 aaKnown RBP14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 TMEM65Q6PI78 240 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 LURAP1Q96LR2 239 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 ZNF318Q5VUA4 2279 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 CKAP5Q14008 2032 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 TMED7-TICAM2A0A0A6YYA0 188 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 A0A1B0GX78 115 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 OR10K2Q6IF99 312 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 OR4N2Q8NGD1 307 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 LILRB1Q8NHL6 650 aaPredicted RBP14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 SLX1AQ9BQ83 275 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 C20orf24Q9BUV8 137 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 ZNF223Q9UK11 482 aaPredicted RBP14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 TMED7Q9Y3B3 224 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 BRCA1P38398 1863 aaKnown RBP14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 HERV-K104P61576 105 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 HAVCR2Q8TDQ0 301 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 WDR34Q96EX3 536 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 ST6GALNAC5Q9BVH7 336 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 CMC2Q9NRP2 79 aa14.87□□□□□ -0.03
CCDC88B-209ENST00000494080 TRIM77I1YAP6 450 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 LANCL1O43813 399 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 OR2F2O95006 317 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 HPXP02790 462 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 GLP1RP43220 463 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 OR2F1Q13607 317 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 NKAIN1Q4KMZ8 207 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 NHLRC1Q6VVB1 395 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 GLDNQ6ZMI3 551 aaPredicted RBP14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 TRILQ7L0X0 811 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 194.1 ms