RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 PPP2R2BQ00005 443 aa17.23■□□□□ 0.35
COL9A3-204ENST00000463487 CDK5Q00535 292 aa17.23■□□□□ 0.35
COL9A3-204ENST00000463487 SCRN3Q0VDG4 424 aa17.23■□□□□ 0.35
COL9A3-204ENST00000463487 CRMP1Q14194 572 aa17.23■□□□□ 0.35
COL9A3-204ENST00000463487 ETFDHQ16134 617 aa17.23■□□□□ 0.35
COL9A3-204ENST00000463487 C20orf204Q6ZNR8 217 aa17.23■□□□□ 0.35
COL9A3-204ENST00000463487 ZBTB46Q86UZ6 589 aa17.23■□□□□ 0.35
COL9A3-204ENST00000463487 OR6V1Q8N148 313 aa17.23■□□□□ 0.35
COL9A3-204ENST00000463487 IQCF1Q8N6M8 205 aa17.23■□□□□ 0.35
COL9A3-204ENST00000463487 CYB561A3Q8NBI2 242 aa17.23■□□□□ 0.35
COL9A3-204ENST00000463487 EME1Q96AY2 570 aa17.23■□□□□ 0.35
COL9A3-204ENST00000463487 TSSK2Q96PF2 358 aa17.23■□□□□ 0.35
COL9A3-204ENST00000463487 UBTD1Q9HAC8 227 aa17.23■□□□□ 0.35
COL9A3-204ENST00000463487 FAIMQ9NVQ4 179 aa17.23■□□□□ 0.35
COL9A3-204ENST00000463487 ZNF224Q9NZL3 707 aa17.23■□□□□ 0.35
COL9A3-204ENST00000463487 TIMM10BQ9Y5J6 103 aa17.23■□□□□ 0.35
COL9A3-204ENST00000463487 CRYBG3Q68DQ2 2970 aa17.22■□□□□ 0.35
COL9A3-204ENST00000463487 IGLV1-36A0A0B4J1U3 117 aa17.22■□□□□ 0.35
COL9A3-204ENST00000463487 HS3ST1O14792 307 aa17.22■□□□□ 0.35
COL9A3-204ENST00000463487 SERPINA5P05154 406 aa17.22■□□□□ 0.35
COL9A3-204ENST00000463487 SLC25A1P53007 311 aa17.22■□□□□ 0.35
COL9A3-204ENST00000463487 CDH11P55287 796 aa17.22■□□□□ 0.35
COL9A3-204ENST00000463487 NAAAQ02083 359 aa17.22■□□□□ 0.35
COL9A3-204ENST00000463487 AQP6Q13520 282 aa17.22■□□□□ 0.35
COL9A3-204ENST00000463487 DAG1Q14118 895 aa17.22■□□□□ 0.35
COL9A3-204ENST00000463487 ZNF672Q499Z4 452 aaPredicted RBP17.22■□□□□ 0.35
COL9A3-204ENST00000463487 OR4F15Q8NGB8 312 aa17.22■□□□□ 0.35
COL9A3-204ENST00000463487 OR1J2Q8NGS2 313 aa17.22■□□□□ 0.35
COL9A3-204ENST00000463487 AKAP1Q92667 903 aaKnown RBP eCLIP17.22■□□□□ 0.35
COL9A3-204ENST00000463487 HTRA1Q92743 480 aa17.22■□□□□ 0.35
COL9A3-204ENST00000463487 FBXW5Q969U6 566 aa17.22■□□□□ 0.35
COL9A3-204ENST00000463487 OTULINQ96BN8 352 aa17.22■□□□□ 0.35
COL9A3-204ENST00000463487 PLEKHF2Q9H8W4 249 aa17.22■□□□□ 0.35
COL9A3-204ENST00000463487 SPEF1Q9Y4P9 236 aa17.22■□□□□ 0.35
COL9A3-204ENST00000463487 CACNA1DQ01668 2161 aa17.22■□□□□ 0.35
COL9A3-204ENST00000463487 ABCA4P78363 2273 aa17.22■□□□□ 0.35
COL9A3-204ENST00000463487 ZNF503-AS2A6NEH8 195 aa17.21■□□□□ 0.35
COL9A3-204ENST00000463487 PRR23D1E9PI22 279 aaPredicted RBP17.21■□□□□ 0.35
COL9A3-204ENST00000463487 PATE4P0C8F1 98 aa17.21■□□□□ 0.35
COL9A3-204ENST00000463487 PRR23D2P0DMB1 279 aaPredicted RBP17.21■□□□□ 0.35
COL9A3-204ENST00000463487 ZNF14P17017 642 aaPredicted RBP17.21■□□□□ 0.35
COL9A3-204ENST00000463487 ZNF32P17041 273 aa17.21■□□□□ 0.35
COL9A3-204ENST00000463487 APLNRP35414 380 aa17.21■□□□□ 0.35
COL9A3-204ENST00000463487 ALDH3A2P51648 485 aa17.21■□□□□ 0.35
COL9A3-204ENST00000463487 RAB39AQ14964 217 aa17.21■□□□□ 0.35
COL9A3-204ENST00000463487 PTGES3Q15185 160 aaKnown RBP17.21■□□□□ 0.35
COL9A3-204ENST00000463487 RCN1Q15293 331 aa17.21■□□□□ 0.35
COL9A3-204ENST00000463487 KCNMB1Q16558 191 aa17.21■□□□□ 0.35
COL9A3-204ENST00000463487 TBC1D28Q2M2D7 210 aa17.21■□□□□ 0.35
COL9A3-204ENST00000463487 KBTBD8Q8NFY9 601 aa17.21■□□□□ 0.35
COL9A3-204ENST00000463487 ZNF416Q9BWM5 594 aa17.21■□□□□ 0.35
COL9A3-204ENST00000463487 CDADC1Q9BWV3 514 aa17.21■□□□□ 0.35
COL9A3-204ENST00000463487 FN3KQ9H479 309 aa17.21■□□□□ 0.35
COL9A3-204ENST00000463487 USE1Q9NZ43 259 aa17.21■□□□□ 0.35
COL9A3-204ENST00000463487 KCNG2Q9UJ96 466 aa17.21■□□□□ 0.35
COL9A3-204ENST00000463487 MOKQ9UQ07 419 aa17.21■□□□□ 0.35
COL9A3-204ENST00000463487 ATP23Q9Y6H3 246 aa17.21■□□□□ 0.35
COL9A3-204ENST00000463487 PRR14LQ5THK1 2151 aa17.21■□□□□ 0.34
COL9A3-204ENST00000463487 VSTM5A8MXK1 200 aa17.2■□□□□ 0.34
COL9A3-204ENST00000463487 SHISA9B4DS77 424 aa17.2■□□□□ 0.34
COL9A3-204ENST00000463487 DCTN6O00399 190 aa17.2■□□□□ 0.34
COL9A3-204ENST00000463487 EI24O14681 340 aa17.2■□□□□ 0.34
COL9A3-204ENST00000463487 SURF4O15260 269 aa17.2■□□□□ 0.34
COL9A3-204ENST00000463487 MITFO75030 526 aaPredicted RBP17.2■□□□□ 0.34
COL9A3-204ENST00000463487 PLAUP00749 431 aa17.2■□□□□ 0.34
COL9A3-204ENST00000463487 ALPLP05186 524 aa17.2■□□□□ 0.34
COL9A3-204ENST00000463487 ZNF823P16415 610 aa17.2■□□□□ 0.34
COL9A3-204ENST00000463487 GALK2Q01415 458 aa17.2■□□□□ 0.34
COL9A3-204ENST00000463487 ENDOGQ14249 297 aaKnown RBP17.2■□□□□ 0.34
COL9A3-204ENST00000463487 SNAPC1Q16533 368 aa17.2■□□□□ 0.34
COL9A3-204ENST00000463487 PABPC1L2AQ5JQF8 200 aa17.2■□□□□ 0.34
COL9A3-204ENST00000463487 ZNF362Q5T0B9 420 aaPredicted RBP17.2■□□□□ 0.34
COL9A3-204ENST00000463487 ACSM5Q6NUN0 579 aa17.2■□□□□ 0.34
COL9A3-204ENST00000463487 ZBTB49Q6ZSB9 765 aa17.2■□□□□ 0.34
COL9A3-204ENST00000463487 CBR4Q8N4T8 237 aa17.2■□□□□ 0.34
COL9A3-204ENST00000463487 OR9Q1Q8NGQ5 310 aa17.2■□□□□ 0.34
COL9A3-204ENST00000463487 FBXO17Q96EF6 278 aa17.2■□□□□ 0.34
COL9A3-204ENST00000463487 FOXN4Q96NZ1 517 aa17.2■□□□□ 0.34
COL9A3-204ENST00000463487 GABARAPL3Q9BY60 117 aa17.2■□□□□ 0.34
COL9A3-204ENST00000463487 RIBC2Q9H4K1 309 aa17.2■□□□□ 0.34
COL9A3-204ENST00000463487 EMC7Q9NPA0 242 aa17.2■□□□□ 0.34
COL9A3-204ENST00000463487 CISD1Q9NZ45 108 aaKnown RBP17.2■□□□□ 0.34
COL9A3-204ENST00000463487 TMEFF2Q9UIK5 374 aaPredicted RBP17.2■□□□□ 0.34
COL9A3-204ENST00000463487 H0YHG0 523 aa17.19■□□□□ 0.34
COL9A3-204ENST00000463487 TMCC2O75069 709 aa17.19■□□□□ 0.34
COL9A3-204ENST00000463487 RAF1P04049 648 aa17.19■□□□□ 0.34
COL9A3-204ENST00000463487 MMP7P09237 267 aaPredicted RBP17.19■□□□□ 0.34
COL9A3-204ENST00000463487 GAAP10253 952 aa17.19■□□□□ 0.34
COL9A3-204ENST00000463487 SPI1P17947 270 aa17.19■□□□□ 0.34
COL9A3-204ENST00000463487 FMO3P31513 532 aa17.19■□□□□ 0.34
COL9A3-204ENST00000463487 KRTAP10-9P60411 292 aa17.19■□□□□ 0.34
COL9A3-204ENST00000463487 TEKQ02763 1124 aa17.19■□□□□ 0.34
COL9A3-204ENST00000463487 SPOCK1Q08629 439 aa17.19■□□□□ 0.34
COL9A3-204ENST00000463487 KEAP1Q14145 624 aa17.19■□□□□ 0.34
COL9A3-204ENST00000463487 TMEM236Q5W0B7 351 aa17.19■□□□□ 0.34
COL9A3-204ENST00000463487 PAMR1Q6UXH9 720 aa17.19■□□□□ 0.34
COL9A3-204ENST00000463487 UNQ6126/PRO20091Q6UXV3 157 aa17.19■□□□□ 0.34
COL9A3-204ENST00000463487 ZSCAN2Q7Z7L9 614 aaPredicted RBP17.19■□□□□ 0.34
COL9A3-204ENST00000463487 CDH24Q86UP0 819 aa17.19■□□□□ 0.34
COL9A3-204ENST00000463487 ZNF611Q8N823 705 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms