RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 LYPD3O95274 346 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 IGHV3-13P01766 116 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 IFNW1P05000 195 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 CST2P09228 141 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 COX5BP10606 129 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 GSTM3P21266 225 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 STOMP27105 288 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 CRYBB2P43320 205 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 ALDH3B1P43353 468 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 GZMMP51124 257 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 SELPLGQ14242 412 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 MELKQ14680 651 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 CYBRD1Q53TN4 286 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 ELFN2Q5R3F8 820 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 FAM27BQ5VT28 67 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 PGM2L1Q6PCE3 622 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 COMTD1Q86VU5 262 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 RBM45Q8IUH3 476 aaKnown RBP6.66□□□□□ -1.34
CD44-211ENST00000442151 MICU2Q8IYU8 434 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 NPEPL1Q8NDH3 523 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 OR1J1Q8NGS3 322 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 TMEM186Q96B77 213 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 BPIFA2Q96DR5 249 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 TPD52L3Q96J77 140 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 PRRC1Q96M27 445 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 SEPHS2Q99611 448 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 SH3GL3Q99963 347 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 PRSS27Q9BQR3 290 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 ANKRD19PQ9H560 264 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 HIF3AQ9Y2N7 669 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 ARFGEF3Q5TH69 2177 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 PLCE1Q9P212 2302 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 ZNF503-AS2A6NEH8 195 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 EFCAB9A8MZ26 197 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 SURF4O15260 269 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 F13BP05160 661 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 MSMBP08118 114 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 TSPAN19P0C672 248 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 FAM157BP0CG42 384 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 IFI30P13284 250 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 TCN1P20061 433 aaPredicted RBP6.66□□□□□ -1.34
CD44-211ENST00000442151 CCNOP22674 350 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 COL8A2P25067 703 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 AQP2P41181 271 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 ZNF81P51508 661 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 SMIM11AP58511 58 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 CTXN1P60606 82 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 SCRN3Q0VDG4 424 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 KRT72Q14CN4 511 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 LRRC23Q53EV4 343 aaPredicted RBP6.66□□□□□ -1.34
CD44-211ENST00000442151 IFI44LQ53G44 452 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 SLC25A47Q6Q0C1 308 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 ZNF730Q6ZMV8 503 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 WDR88Q6ZMY6 472 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 C1orf229Q6ZS94 237 aaPredicted RBP6.66□□□□□ -1.34
CD44-211ENST00000442151 FKBP9P1Q75LS8 142 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 OAFQ86UD1 273 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 MYPOPQ86VE0 399 aaPredicted RBP6.66□□□□□ -1.34
CD44-211ENST00000442151 ZCCHC24Q8N2G6 241 aaKnown RBP6.66□□□□□ -1.34
CD44-211ENST00000442151 LRRC18Q8N456 261 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 LRRC17Q8N6Y2 441 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 SYT14Q8NB59 555 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 ICA1LQ8NDH6 482 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 GEMIN6Q8WXD5 167 aaKnown RBP6.66□□□□□ -1.34
CD44-211ENST00000442151 ZNF583Q96ND8 569 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 ZNF347Q96SE7 839 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 C19orf24Q9BVV8 132 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 KRTAP4-11Q9BYQ6 195 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 MEPEQ9NQ76 525 aaPredicted RBP6.66□□□□□ -1.34
CD44-211ENST00000442151 SAR1AQ9NR31 198 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 ZNF275Q9NSD4 429 aaPredicted RBP6.66□□□□□ -1.34
CD44-211ENST00000442151 ZNF224Q9NZL3 707 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 GRHPRQ9UBQ7 328 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 RPS6KA6Q9UK32 745 aa6.66□□□□□ -1.34
CD44-211ENST00000442151 FBN3Q75N90 2809 aa6.65□□□□□ -1.34
CD44-211ENST00000442151 YLPM1P49750 1951 aaKnown RBP6.65□□□□□ -1.34
CD44-211ENST00000442151 IGHV1-69-2A0A0G2JMI3 117 aa6.65□□□□□ -1.34
CD44-211ENST00000442151 LOC100653049A0A140TA62 436 aa6.65□□□□□ -1.34
CD44-211ENST00000442151 TRIM77I1YAP6 450 aa6.65□□□□□ -1.34
CD44-211ENST00000442151 FBP2O00757 339 aa6.65□□□□□ -1.34
CD44-211ENST00000442151 KRT34O76011 436 aa6.65□□□□□ -1.34
CD44-211ENST00000442151 IGHMP01871 453 aa6.65□□□□□ -1.34
CD44-211ENST00000442151 HPXP02790 462 aa6.65□□□□□ -1.34
CD44-211ENST00000442151 THY1P04216 161 aa6.65□□□□□ -1.34
CD44-211ENST00000442151 NAT2P11245 290 aa6.65□□□□□ -1.34
CD44-211ENST00000442151 FPR2P25090 351 aa6.65□□□□□ -1.34
CD44-211ENST00000442151 SEC24CP53992 1094 aa6.65□□□□□ -1.34
CD44-211ENST00000442151 PRKCDQ05655 676 aa6.65□□□□□ -1.34
CD44-211ENST00000442151 PIN1Q13526 163 aaPredicted RBP6.65□□□□□ -1.34
CD44-211ENST00000442151 PABPC1L2AQ5JQF8 200 aa6.65□□□□□ -1.34
CD44-211ENST00000442151 ARMC4Q5T2S8 1044 aa6.65□□□□□ -1.34
CD44-211ENST00000442151 MBNL2Q5VZF2 373 aaKnown RBP6.65□□□□□ -1.34
CD44-211ENST00000442151 GPR139Q6DWJ6 353 aa6.65□□□□□ -1.34
CD44-211ENST00000442151 SLC27A4Q6P1M0 643 aa6.65□□□□□ -1.34
CD44-211ENST00000442151 DNM1P34Q6PK57 102 aa6.65□□□□□ -1.34
CD44-211ENST00000442151 NKAIN4Q8IVV8 208 aa6.65□□□□□ -1.34
CD44-211ENST00000442151 OFCC1Q8IZS5 231 aa6.65□□□□□ -1.34
CD44-211ENST00000442151 ARIH2OSQ8N7S6 290 aa6.65□□□□□ -1.34
CD44-211ENST00000442151 FAM156AQ8NDB6 213 aa6.65□□□□□ -1.34
CD44-211ENST00000442151 OR4D11Q8NGI4 311 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms