RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 STON2Q8WXE9 905 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 C22orf15Q8WYQ4 148 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 CCL17Q92583 94 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 MARS2Q96GW9 593 aaKnown RBP9.83□□□□□ -0.84
USP4-204ENST00000416417 TMPRSS13Q9BYE2 586 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 OR2J1Q9GZK6 312 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 LRMDAQ9H2I8 198 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 KCNN2Q9H2S1 579 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 C1orf198Q9H425 327 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 POFUT1Q9H488 388 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 SAP30LQ9HAJ7 183 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 BAG5Q9UL15 447 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 TENM1Q9UKZ4 2725 aa9.83□□□□□ -0.84
USP4-204ENST00000416417 TRAV20A0A0B4J274 112 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 A0A1W2PPL8 197 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 ISPDA4D126 451 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 CLDN25C9JDP6 229 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 IGHV2-5P01817 119 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 TSPAN19P0C672 248 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 EPHA1P21709 976 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 GCH1P30793 250 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 GDI2P50395 445 aaKnown RBP9.82□□□□□ -0.84
USP4-204ENST00000416417 MMP15P51511 669 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 CTXN1P60606 82 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 ACTG1P63261 375 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 LCN2P80188 198 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 PCGF3Q3KNV8 242 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 ZNF718Q3SXZ3 478 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 ZNF774Q6NX45 483 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 VTCN1Q7Z7D3 282 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 OR8J3Q8NGG0 315 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 ABHD4Q8TB40 342 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 BPIFA2Q96DR5 249 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 OR2H1Q9GZK4 316 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 TXNIPQ9H3M7 391 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 MSL2Q9HCI7 577 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 NKIRAS2Q9NYR9 191 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 UBAP1Q9NZ09 502 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 A4GNTQ9UNA3 340 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 SASH3O75995 380 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 KDELR2P33947 212 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 RPL27P61353 136 aaKnown RBP9.82□□□□□ -0.84
USP4-204ENST00000416417 PPP1CBP62140 327 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 FHL1Q13642 323 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 HFEQ30201 348 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 NRN1LQ496H8 165 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 METTL21CQ5VZV1 264 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 TBPL2Q6SJ96 375 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 HDXQ7Z353 690 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 PEG10Q86TG7 708 aaKnown RBP9.82□□□□□ -0.84
USP4-204ENST00000416417 NRMQ8IXM6 262 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 POU5F2Q8N7G0 328 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 LRRC75AQ8NAA5 344 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 OR13C2Q8NGS9 318 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 KLF14Q8TD94 323 aaPredicted RBP9.82□□□□□ -0.84
USP4-204ENST00000416417 ZNF418Q8TF45 676 aaPredicted RBP9.82□□□□□ -0.84
USP4-204ENST00000416417 LIPHQ8WWY8 451 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 DCLRE1CQ96SD1 692 aaKnown RBP9.82□□□□□ -0.84
USP4-204ENST00000416417 SLC6A7Q99884 636 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 PLA2G12AQ9BZM1 189 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 EMC7Q9NPA0 242 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 SAR1AQ9NR31 198 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 FGFR1OP2Q9NVK5 253 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 EIF3KQ9UBQ5 218 aaKnown RBP9.82□□□□□ -0.84
USP4-204ENST00000416417 PCDHB10Q9UN67 800 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 HIF3AQ9Y2N7 669 aa9.82□□□□□ -0.84
USP4-204ENST00000416417 FAM220BPB1ANY3 271 aa9.81□□□□□ -0.84
USP4-204ENST00000416417 CENPBD1B2RD01 187 aa9.81□□□□□ -0.84
USP4-204ENST00000416417 ARFIP2P53365 341 aa9.81□□□□□ -0.84
USP4-204ENST00000416417 TEKQ02763 1124 aa9.81□□□□□ -0.84
USP4-204ENST00000416417 ENDOGQ14249 297 aaKnown RBP9.81□□□□□ -0.84
USP4-204ENST00000416417 FAM27BQ5VT28 67 aa9.81□□□□□ -0.84
USP4-204ENST00000416417 DCAF12L2Q5VW00 463 aa9.81□□□□□ -0.84
USP4-204ENST00000416417 HDDC2Q7Z4H3 204 aa9.81□□□□□ -0.84
USP4-204ENST00000416417 OR2T12Q8NG77 320 aa9.81□□□□□ -0.84
USP4-204ENST00000416417 RCN3Q96D15 328 aa9.81□□□□□ -0.84
USP4-204ENST00000416417 SH3GL1Q99961 368 aa9.81□□□□□ -0.84
USP4-204ENST00000416417 GAL3ST1Q99999 423 aa9.81□□□□□ -0.84
USP4-204ENST00000416417 MAN2C1Q9NTJ4 1040 aa9.81□□□□□ -0.84
USP4-204ENST00000416417 CMTM6Q9NX76 183 aa9.81□□□□□ -0.84
USP4-204ENST00000416417 ARMCX1Q9P291 453 aa9.81□□□□□ -0.84
USP4-204ENST00000416417 PLSCR5A0PG75 271 aa9.8□□□□□ -0.84
USP4-204ENST00000416417 IMPA2O14732 288 aa9.8□□□□□ -0.84
USP4-204ENST00000416417 FFAR1O14842 300 aa9.8□□□□□ -0.84
USP4-204ENST00000416417 UBOX5O94941 541 aa9.8□□□□□ -0.84
USP4-204ENST00000416417 IFNA14P01570 189 aa9.8□□□□□ -0.84
USP4-204ENST00000416417 MT-ND5P03915 603 aa9.8□□□□□ -0.84
USP4-204ENST00000416417 ANPEPP15144 967 aa9.8□□□□□ -0.84
USP4-204ENST00000416417 ZNF26P17031 533 aaPredicted RBP9.8□□□□□ -0.84
USP4-204ENST00000416417 GPR4P46093 362 aa9.8□□□□□ -0.84
USP4-204ENST00000416417 ST3GAL3Q11203 375 aa9.8□□□□□ -0.84
USP4-204ENST00000416417 TAF11Q15544 211 aa9.8□□□□□ -0.84
USP4-204ENST00000416417 MOGQ16653 247 aa9.8□□□□□ -0.84
USP4-204ENST00000416417 MBNL2Q5VZF2 373 aaKnown RBP9.8□□□□□ -0.84
USP4-204ENST00000416417 ERICH5Q6P6B1 374 aa9.8□□□□□ -0.84
USP4-204ENST00000416417 SLC7A6Q92536 515 aa9.8□□□□□ -0.84
USP4-204ENST00000416417 RAB1CQ92928 201 aa9.8□□□□□ -0.84
USP4-204ENST00000416417 RAB39BQ96DA2 213 aa9.8□□□□□ -0.84
USP4-204ENST00000416417 ELMOD3Q96FG2 381 aa9.8□□□□□ -0.84
USP4-204ENST00000416417 TIMD4Q96H15 378 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms