RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 LYPD4Q6UWN0 246 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 GLCCI1Q86VQ1 547 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 BPHLQ86WA6 291 aaPredicted RBP13.3□□□□□ -0.28
USP4-203ENST00000415188 OR6V1Q8N148 313 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 SLC38A9Q8NBW4 561 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 OR6N2Q8NGY6 317 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 ZNF417Q8TAU3 575 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 ZNF519Q8TB69 540 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 ZFAND1Q8TCF1 268 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 METTL21AQ8WXB1 218 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 ST8SIA1Q92185 356 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 NSMAFQ92636 917 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 FYTTD1Q96QD9 318 aaKnown RBP13.3□□□□□ -0.28
USP4-203ENST00000415188 OR2M2Q96R28 347 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 PTDSS2Q9BVG9 487 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 TXNIPQ9H3M7 391 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 TCF7L1Q9HCS4 588 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 TAS2R5Q9NYW4 299 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 KLHDC2Q9Y2U9 406 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 CPAMD8Q8IZJ3 1885 aa13.3□□□□□ -0.28
USP4-203ENST00000415188 ACOD1A6NK06 481 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 OR4C45A6NMZ5 311 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 FAM171A2A8MVW0 826 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 CENPBD1B2RD01 187 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 C21orf140B9A014 251 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 FAM47E-STBD1D6RA91 191 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 AHSA1O95433 338 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 NUDT14O95848 222 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 CFPP27918 469 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 GRPRP30550 384 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 CCR9P51686 369 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 DGCR2P98153 550 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 TNK1Q13470 666 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 KLF9Q13886 244 aaPredicted RBP13.29□□□□□ -0.28
USP4-203ENST00000415188 C1orf140Q5VVS0 124 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 LCN10Q6JVE6 187 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 COX15Q7KZN9 410 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 KRT74Q7RTS7 529 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 CMTM4Q8IZR5 234 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 OR2G2Q8NGZ5 317 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 OTOSQ8NHW6 89 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 NUBPLQ8TB37 319 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 MR1Q95460 341 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 ZNF524Q96C55 264 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 SCMH1Q96GD3 660 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 TSSK2Q96PF2 358 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 GFI1Q99684 422 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 GON7Q9BXV9 100 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 RTN4RQ9BZR6 473 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 PTTG3PQ9NZH4 202 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 IKZF2Q9UKS7 526 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 PPIEQ9UNP9 301 aaKnown RBP13.29□□□□□ -0.28
USP4-203ENST00000415188 TP53TG5Q9Y2B4 290 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 FER1L5A0AVI2 2057 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 PRSS37A4D1T9 235 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 ANKUB1A6NFN9 424 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 A6NIZ1 184 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 NPIPB13A6NJU9 1138 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 TTLL8A6PVC2 850 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 IDSB3KWA1 339 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 NPIPB4C9JG80 1138 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 GABARAPH6UMI1 98 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 AKR7A3O95154 331 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 OR6A2O95222 327 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 TCRBP04435 133 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 NAGAP17050 411 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 RAP1BP61224 184 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 RAP1AP62834 184 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 FAPQ12884 760 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 C1orf189Q5VU69 101 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 STAC2Q6ZMT1 411 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 BTN2A1Q7KYR7 527 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 SIAH3Q8IW03 269 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 ZNF454Q8N9F8 522 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 GRPEL2Q8TAA5 225 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 GPR148Q8TDV2 347 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 DEDD2Q8WXF8 326 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 S100A16Q96FQ6 103 aaKnown RBP13.29□□□□□ -0.28
USP4-203ENST00000415188 ZFP3Q96NJ6 502 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 MED28Q9H204 178 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 SYT4Q9H2B2 425 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 EMC7Q9NPA0 242 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 MCUBQ9NWR8 336 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 PAQR5Q9NXK6 330 aaPredicted RBP13.29□□□□□ -0.28
USP4-203ENST00000415188 FRRS1LQ9P0K9 344 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 B9D1Q9UPM9 204 aa13.29□□□□□ -0.28
USP4-203ENST00000415188 SPENQ96T58 3664 aaKnown RBP13.28□□□□□ -0.28
USP4-203ENST00000415188 A0A0B4J203 849 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 TVP23AA6NH52 213 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 DCTN6O00399 190 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 GPR171O14626 319 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 SCO2O43819 266 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 RPP14O95059 124 aaKnown RBP13.28□□□□□ -0.28
USP4-203ENST00000415188 ONECUT2O95948 504 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 CYC1P08574 325 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 CD3GP09693 182 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 STOMP27105 288 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 CASRP41180 1078 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 RNF4P78317 190 aa13.28□□□□□ -0.28
USP4-203ENST00000415188 ZP4Q12836 540 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms