RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 APOBEC3AP31941 199 aaPredicted RBP18.82■□□□□ 0.6
CLN3-207ENST00000395653 FABP6P51161 128 aa18.82■□□□□ 0.6
CLN3-207ENST00000395653 LEG1Q6P5S2 330 aa18.82■□□□□ 0.6
CLN3-207ENST00000395653 SHQ1Q6PI26 577 aaKnown RBP18.82■□□□□ 0.6
CLN3-207ENST00000395653 FBXL14Q8N1E6 418 aa18.82■□□□□ 0.6
CLN3-207ENST00000395653 MUC15Q8N387 334 aa18.82■□□□□ 0.6
CLN3-207ENST00000395653 LNX2Q8N448 690 aa18.82■□□□□ 0.6
CLN3-207ENST00000395653 FBXO17Q96EF6 278 aa18.82■□□□□ 0.6
CLN3-207ENST00000395653 NMNAT3Q96T66 252 aa18.82■□□□□ 0.6
CLN3-207ENST00000395653 WACQ9BTA9 647 aa18.82■□□□□ 0.6
CLN3-207ENST00000395653 TSSK6Q9BXA6 273 aa18.82■□□□□ 0.6
CLN3-207ENST00000395653 CCNB1IP1Q9NPC3 277 aa18.82■□□□□ 0.6
CLN3-207ENST00000395653 CA10Q9NS85 328 aa18.82■□□□□ 0.6
CLN3-207ENST00000395653 BAIAP2Q9UQB8 552 aa18.82■□□□□ 0.6
CLN3-207ENST00000395653 OVOL3O00110 214 aa18.81■□□□□ 0.6
CLN3-207ENST00000395653 SOX14O95416 240 aa18.81■□□□□ 0.6
CLN3-207ENST00000395653 PTHP01270 115 aa18.81■□□□□ 0.6
CLN3-207ENST00000395653 ZNF35P13682 527 aa18.81■□□□□ 0.6
CLN3-207ENST00000395653 ANXA8P13928 327 aa18.81■□□□□ 0.6
CLN3-207ENST00000395653 ZNF32P17041 273 aa18.81■□□□□ 0.6
CLN3-207ENST00000395653 HGFACQ04756 655 aa18.81■□□□□ 0.6
CLN3-207ENST00000395653 PLP2Q04941 152 aa18.81■□□□□ 0.6
CLN3-207ENST00000395653 ATP6AP1Q15904 470 aa18.81■□□□□ 0.6
CLN3-207ENST00000395653 SPNS3Q6ZMD2 512 aa18.81■□□□□ 0.6
CLN3-207ENST00000395653 GLB1L2Q8IW92 636 aa18.81■□□□□ 0.6
CLN3-207ENST00000395653 HS3ST5Q8IZT8 346 aa18.81■□□□□ 0.6
CLN3-207ENST00000395653 OR2T33Q8NG76 320 aa18.81■□□□□ 0.6
CLN3-207ENST00000395653 GSX2Q9BZM3 304 aa18.81■□□□□ 0.6
CLN3-207ENST00000395653 CBLN4Q9NTU7 201 aa18.81■□□□□ 0.6
CLN3-207ENST00000395653 ZNF701Q9NV72 531 aaPredicted RBP18.81■□□□□ 0.6
CLN3-207ENST00000395653 IQCMA0A1B0GVH7 501 aa18.8■□□□□ 0.6
CLN3-207ENST00000395653 CD8AP01732 235 aa18.8■□□□□ 0.6
CLN3-207ENST00000395653 IGFBP1P08833 259 aaPredicted RBP18.8■□□□□ 0.6
CLN3-207ENST00000395653 FCGR1AP12314 374 aa18.8■□□□□ 0.6
CLN3-207ENST00000395653 FASP25445 335 aa18.8■□□□□ 0.6
CLN3-207ENST00000395653 PCBD1P61457 104 aa18.8■□□□□ 0.6
CLN3-207ENST00000395653 ENDOGQ14249 297 aaKnown RBP18.8■□□□□ 0.6
CLN3-207ENST00000395653 SLC35F1Q5T1Q4 408 aa18.8■□□□□ 0.6
CLN3-207ENST00000395653 SYT9Q86SS6 491 aa18.8■□□□□ 0.6
CLN3-207ENST00000395653 SLC30A7Q8NEW0 376 aa18.8■□□□□ 0.6
CLN3-207ENST00000395653 SDR9C7Q8NEX9 313 aa18.8■□□□□ 0.6
CLN3-207ENST00000395653 OR52E2Q8NGJ4 325 aa18.8■□□□□ 0.6
CLN3-207ENST00000395653 BDH2Q9BUT1 245 aa18.8■□□□□ 0.6
CLN3-207ENST00000395653 ZNF416Q9BWM5 594 aa18.8■□□□□ 0.6
CLN3-207ENST00000395653 RACGAP1Q9H0H5 632 aa18.8■□□□□ 0.6
CLN3-207ENST00000395653 RERGLQ9H628 205 aa18.8■□□□□ 0.6
CLN3-207ENST00000395653 ZNF442Q9H7R0 627 aa18.8■□□□□ 0.6
CLN3-207ENST00000395653 ZNF556Q9HAH1 456 aa18.8■□□□□ 0.6
CLN3-207ENST00000395653 REV1Q9UBZ9 1251 aa18.8■□□□□ 0.6
CLN3-207ENST00000395653 COA3Q9Y2R0 106 aaPredicted RBP18.8■□□□□ 0.6
CLN3-207ENST00000395653 C12orf71A8MTZ7 269 aa18.79■□□□□ 0.6
CLN3-207ENST00000395653 ACTR3P61158 418 aa18.79■□□□□ 0.6
CLN3-207ENST00000395653 NKX6-1P78426 367 aaPredicted RBP18.79■□□□□ 0.6
CLN3-207ENST00000395653 HSF2Q03933 536 aa18.79■□□□□ 0.6
CLN3-207ENST00000395653 KHDRBS1Q07666 443 aaKnown RBP eCLIP18.79■□□□□ 0.6
CLN3-207ENST00000395653 SLC36A3Q495N2 470 aa18.79■□□□□ 0.6
CLN3-207ENST00000395653 PABPC1L2AQ5JQF8 200 aa18.79■□□□□ 0.6
CLN3-207ENST00000395653 C11orf71Q6IPW1 123 aa18.79■□□□□ 0.6
CLN3-207ENST00000395653 OR6V1Q8N148 313 aa18.79■□□□□ 0.6
CLN3-207ENST00000395653 NPEPL1Q8NDH3 523 aa18.79■□□□□ 0.6
CLN3-207ENST00000395653 TEX47Q8TBZ9 253 aa18.79■□□□□ 0.6
CLN3-207ENST00000395653 TSSK2Q96PF2 358 aa18.79■□□□□ 0.6
CLN3-207ENST00000395653 RPRD1BQ9NQG5 326 aaKnown RBP18.79■□□□□ 0.6
CLN3-207ENST00000395653 B9D1Q9UPM9 204 aa18.79■□□□□ 0.6
CLN3-207ENST00000395653 TIMM10BQ9Y5J6 103 aa18.79■□□□□ 0.6
CLN3-207ENST00000395653 FKBP7Q9Y680 259 aa18.79■□□□□ 0.6
CLN3-207ENST00000395653 PRRC2AP48634 2157 aaKnown RBP18.79■□□□□ 0.6
CLN3-207ENST00000395653 IGLV1-36A0A0B4J1U3 117 aa18.78■□□□□ 0.6
CLN3-207ENST00000395653 OR6C68A6NDL8 312 aa18.78■□□□□ 0.6
CLN3-207ENST00000395653 DCTN6O00399 190 aa18.78■□□□□ 0.6
CLN3-207ENST00000395653 SCG5P05408 212 aa18.78■□□□□ 0.6
CLN3-207ENST00000395653 PRKACGP22612 351 aa18.78■□□□□ 0.6
CLN3-207ENST00000395653 NR4A1P22736 598 aa18.78■□□□□ 0.6
CLN3-207ENST00000395653 PTH2RP49190 550 aa18.78■□□□□ 0.6
CLN3-207ENST00000395653 LSM6P62312 80 aaKnown RBP18.78■□□□□ 0.6
CLN3-207ENST00000395653 PSG4Q00888 419 aa18.78■□□□□ 0.6
CLN3-207ENST00000395653 DAG1Q14118 895 aa18.78■□□□□ 0.6
CLN3-207ENST00000395653 UGT2A3Q6UWM9 527 aa18.78■□□□□ 0.6
CLN3-207ENST00000395653 ZBTB46Q86UZ6 589 aa18.78■□□□□ 0.6
CLN3-207ENST00000395653 OR4Q3Q8NH05 313 aa18.78■□□□□ 0.6
CLN3-207ENST00000395653 OR5K1Q8NHB7 308 aa18.78■□□□□ 0.6
CLN3-207ENST00000395653 DNAJC9Q8WXX5 260 aa18.78■□□□□ 0.6
CLN3-207ENST00000395653 DDOQ99489 341 aa18.78■□□□□ 0.6
CLN3-207ENST00000395653 OR2H1Q9GZK4 316 aa18.78■□□□□ 0.6
CLN3-207ENST00000395653 EMC7Q9NPA0 242 aa18.78■□□□□ 0.6
CLN3-207ENST00000395653 SPEF1Q9Y4P9 236 aa18.78■□□□□ 0.6
CLN3-207ENST00000395653 H3BN98 237 aa18.77■□□□□ 0.6
CLN3-207ENST00000395653 SNAP29O95721 258 aa18.77■□□□□ 0.6
CLN3-207ENST00000395653 GALK2Q01415 458 aa18.77■□□□□ 0.6
CLN3-207ENST00000395653 SNTB2Q13425 540 aaKnown RBP18.77■□□□□ 0.6
CLN3-207ENST00000395653 KCNMB1Q16558 191 aa18.77■□□□□ 0.6
CLN3-207ENST00000395653 TBC1D28Q2M2D7 210 aa18.77■□□□□ 0.6
CLN3-207ENST00000395653 ZNF362Q5T0B9 420 aaPredicted RBP18.77■□□□□ 0.6
CLN3-207ENST00000395653 KRT80Q6KB66 452 aa18.77■□□□□ 0.6
CLN3-207ENST00000395653 YTHDF3Q7Z739 585 aaKnown RBP18.77■□□□□ 0.6
CLN3-207ENST00000395653 ALDH16A1Q8IZ83 802 aa18.77■□□□□ 0.6
CLN3-207ENST00000395653 ATG16L2Q8NAA4 619 aa18.77■□□□□ 0.6
CLN3-207ENST00000395653 CPEB3Q8NE35 698 aaKnown RBP18.77■□□□□ 0.6
CLN3-207ENST00000395653 OR1J2Q8NGS2 313 aa18.77■□□□□ 0.6
CLN3-207ENST00000395653 PERPQ96FX8 193 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms